Gene : Carub.0006s0638 C. rubella v1.1
Defline:  (1 of 4) PTHR31321:SF23 - PECTINESTERASE PPME1-RELATED Genomic Order:  638
Name:  ? Carub.0006s0638 Secondary Identifier:  ? PAC:39247834
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0638 0.5kb upstream 0.5kb upstream 2205 true scaffold_6: 2345071-2347275 Capsella rubella
Carub.0006s0638 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 2345071-2345570 Capsella rubella
Carub.0006s0638 0.5kb downstream 0.5kb downstream 2205 true scaffold_6: 2345571-2347775 Capsella rubella
Carub.0006s0638 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 2347276-2347775 Capsella rubella
Carub.0006s0638 1.0kb upstream 1.0kb upstream 2705 true scaffold_6: 2344571-2347275 Capsella rubella
Carub.0006s0638 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 2344571-2345570 Capsella rubella
Carub.0006s0638 1.0kb downstream 1.0kb downstream 2705 true scaffold_6: 2345571-2348275 Capsella rubella
Carub.0006s0638 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 2347276-2348275 Capsella rubella
Carub.0006s0638 2.0kb upstream 2.0kb upstream 3705 true scaffold_6: 2343571-2347275 Capsella rubella
Carub.0006s0638 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 2343571-2345570 Capsella rubella
Carub.0006s0638 2.0kb downstream 2.0kb downstream 3705 true scaffold_6: 2345571-2349275 Capsella rubella
Carub.0006s0638 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 2347276-2349275 Capsella rubella
Carub.0006s0638 5.0kb upstream 5.0kb upstream 6705 true scaffold_6: 2340571-2347275 Capsella rubella
Carub.0006s0638 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 2340571-2345570 Capsella rubella
Carub.0006s0638 5.0kb downstream 5.0kb downstream 6705 true scaffold_6: 2345571-2352275 Capsella rubella
Carub.0006s0638 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 2347276-2352275 Capsella rubella
Carub.0006s0638 10.0kb upstream 10.0kb upstream 11705 true scaffold_6: 2335571-2347275 Capsella rubella
Carub.0006s0638 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 2335571-2345570 Capsella rubella
Carub.0006s0638 10.0kb downstream 10.0kb downstream 11705 true scaffold_6: 2345571-2357275 Capsella rubella
Carub.0006s0638 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 2347276-2357275 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375100 5261 Brassicaceae View MSA
123836646 5264 Brassicales-Malvales View MSA
124350112 5266 SBM View MSA
124253324 5268 Malvidae View MSA
124071696 5270 Rosid View MSA
123740013 5271 Pentapetalae View MSA
122792940 5272 Eudicot View MSA
122051382 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain