Gene : Carub.0008s2406 C. rubella v1.1
Defline:  (1 of 1) PTHR11349:SF44 - NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC Genomic Order:  2406
Name:  ? Carub.0008s2406 Secondary Identifier:  ? PAC:39251552
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Sequence Feature Displayer

Ontology Annotation Displayer

21 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY0-162 Capsella rubella pathologic  
Crubella PWY-6126 Capsella rubella pathologic  
Crubella PWY-6545 Capsella rubella pathologic  
Crubella PWY-7176 Capsella rubella pathologic  
Crubella PWY-7184 Capsella rubella pathologic  
Crubella PWY-7196 Capsella rubella pathologic  
Crubella PWY-7197 Capsella rubella pathologic  
Crubella PWY-7200 Capsella rubella pathologic  
Crubella PWY-7205 Capsella rubella pathologic  
Crubella PWY-7208 Capsella rubella pathologic  
Crubella PWY-7210 Capsella rubella pathologic  
Crubella PWY-7211 Capsella rubella pathologic  
Crubella PWY-7220 Capsella rubella pathologic  
Crubella PWY-7221 Capsella rubella pathologic  
Crubella PWY-7222 Capsella rubella pathologic  
Crubella PWY-7224 Capsella rubella pathologic  
Crubella PWY-7226 Capsella rubella pathologic  
Crubella PWY-7227 Capsella rubella pathologic  
Crubella PWY-7228 Capsella rubella pathologic  
Crubella PWY-7229 Capsella rubella pathologic  
Crubella PWY-841 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s2406 0.5kb upstream 0.5kb upstream 2357 true scaffold_8: 11713100-11715456 Capsella rubella
Carub.0008s2406 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 11714957-11715456 Capsella rubella
Carub.0008s2406 0.5kb downstream 0.5kb downstream 2357 true scaffold_8: 11712600-11714956 Capsella rubella
Carub.0008s2406 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 11712600-11713099 Capsella rubella
Carub.0008s2406 1.0kb upstream 1.0kb upstream 2857 true scaffold_8: 11713100-11715956 Capsella rubella
Carub.0008s2406 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 11714957-11715956 Capsella rubella
Carub.0008s2406 1.0kb downstream 1.0kb downstream 2857 true scaffold_8: 11712100-11714956 Capsella rubella
Carub.0008s2406 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 11712100-11713099 Capsella rubella
Carub.0008s2406 2.0kb upstream 2.0kb upstream 3857 true scaffold_8: 11713100-11716956 Capsella rubella
Carub.0008s2406 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 11714957-11716956 Capsella rubella
Carub.0008s2406 2.0kb downstream 2.0kb downstream 3857 true scaffold_8: 11711100-11714956 Capsella rubella
Carub.0008s2406 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 11711100-11713099 Capsella rubella
Carub.0008s2406 5.0kb upstream 5.0kb upstream 6857 true scaffold_8: 11713100-11719956 Capsella rubella
Carub.0008s2406 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 11714957-11719956 Capsella rubella
Carub.0008s2406 5.0kb downstream 5.0kb downstream 6857 true scaffold_8: 11708100-11714956 Capsella rubella
Carub.0008s2406 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 11708100-11713099 Capsella rubella
Carub.0008s2406 10.0kb upstream 10.0kb upstream 11857 true scaffold_8: 11713100-11724956 Capsella rubella
Carub.0008s2406 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 11714957-11724956 Capsella rubella
Carub.0008s2406 10.0kb downstream 10.0kb downstream 11857 true scaffold_8: 11703100-11714956 Capsella rubella
Carub.0008s2406 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 11703100-11713099 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372106 5261 Brassicaceae View MSA
123832017 5264 Brassicales-Malvales View MSA
124342170 5266 SBM View MSA
124242132 5268 Malvidae View MSA
124063920 5270 Rosid View MSA
123743535 5271 Pentapetalae View MSA
122788809 5272 Eudicot View MSA
122050213 5273 Angiosperm View MSA
123428962 5275 Viridiplantae View MSA
121346571 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain