Gene : Carub.0008s2490 C. rubella v1.1
Defline:  (1 of 4) PTHR31235//PTHR31235:SF27 - FAMILY NOT NAMED // PEROXIDASE 62-RELATED Genomic Order:  2490
Name:  ? Carub.0008s2490 Secondary Identifier:  ? PAC:39252491
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5466 Capsella rubella pathologic  
Crubella PWY-7214 Capsella rubella pathologic  
Crubella PWY-7445 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s2490 0.5kb upstream 0.5kb upstream 2022 true scaffold_8: 12026181-12028202 Capsella rubella
Carub.0008s2490 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 12027703-12028202 Capsella rubella
Carub.0008s2490 0.5kb downstream 0.5kb downstream 2022 true scaffold_8: 12025681-12027702 Capsella rubella
Carub.0008s2490 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 12025681-12026180 Capsella rubella
Carub.0008s2490 1.0kb upstream 1.0kb upstream 2522 true scaffold_8: 12026181-12028702 Capsella rubella
Carub.0008s2490 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 12027703-12028702 Capsella rubella
Carub.0008s2490 1.0kb downstream 1.0kb downstream 2522 true scaffold_8: 12025181-12027702 Capsella rubella
Carub.0008s2490 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 12025181-12026180 Capsella rubella
Carub.0008s2490 2.0kb upstream 2.0kb upstream 3522 true scaffold_8: 12026181-12029702 Capsella rubella
Carub.0008s2490 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 12027703-12029702 Capsella rubella
Carub.0008s2490 2.0kb downstream 2.0kb downstream 3522 true scaffold_8: 12024181-12027702 Capsella rubella
Carub.0008s2490 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 12024181-12026180 Capsella rubella
Carub.0008s2490 5.0kb upstream 5.0kb upstream 6522 true scaffold_8: 12026181-12032702 Capsella rubella
Carub.0008s2490 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 12027703-12032702 Capsella rubella
Carub.0008s2490 5.0kb downstream 5.0kb downstream 6522 true scaffold_8: 12021181-12027702 Capsella rubella
Carub.0008s2490 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 12021181-12026180 Capsella rubella
Carub.0008s2490 10.0kb upstream 10.0kb upstream 11522 true scaffold_8: 12026181-12037702 Capsella rubella
Carub.0008s2490 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 12027703-12037702 Capsella rubella
Carub.0008s2490 10.0kb downstream 10.0kb downstream 11522 true scaffold_8: 12016181-12027702 Capsella rubella
Carub.0008s2490 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 12016181-12026180 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361489 5261 Brassicaceae View MSA
123836413 5264 Brassicales-Malvales View MSA
124342166 5266 SBM View MSA
124248571 5268 Malvidae View MSA
124066864 5270 Rosid View MSA
123752607 5271 Pentapetalae View MSA
122796741 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain