Gene : Carub.0002s2639 C. rubella v1.1
Defline:  (1 of 3) K00134 - glyceraldehyde 3-phosphate dehydrogenase (GAPDH, gapA) Genomic Order:  2639
Name:  ? Carub.0002s2639 Secondary Identifier:  ? PAC:39245680
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ANAEROFRUCAT-PWY Capsella rubella pathologic  
Crubella ANAGLYCOLYSIS-PWY Capsella rubella pathologic  
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella PWY-1042 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY66-399 Capsella rubella pathologic  
Crubella SUCSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s2639 0.5kb upstream 0.5kb upstream 4040 true scaffold_2: 13596366-13600405 Capsella rubella
Carub.0002s2639 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 13599906-13600405 Capsella rubella
Carub.0002s2639 0.5kb downstream 0.5kb downstream 4040 true scaffold_2: 13595866-13599905 Capsella rubella
Carub.0002s2639 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 13595866-13596365 Capsella rubella
Carub.0002s2639 1.0kb upstream 1.0kb upstream 4540 true scaffold_2: 13596366-13600905 Capsella rubella
Carub.0002s2639 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 13599906-13600905 Capsella rubella
Carub.0002s2639 1.0kb downstream 1.0kb downstream 4540 true scaffold_2: 13595366-13599905 Capsella rubella
Carub.0002s2639 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 13595366-13596365 Capsella rubella
Carub.0002s2639 2.0kb upstream 2.0kb upstream 5540 true scaffold_2: 13596366-13601905 Capsella rubella
Carub.0002s2639 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 13599906-13601905 Capsella rubella
Carub.0002s2639 2.0kb downstream 2.0kb downstream 5540 true scaffold_2: 13594366-13599905 Capsella rubella
Carub.0002s2639 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 13594366-13596365 Capsella rubella
Carub.0002s2639 5.0kb upstream 5.0kb upstream 8540 true scaffold_2: 13596366-13604905 Capsella rubella
Carub.0002s2639 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 13599906-13604905 Capsella rubella
Carub.0002s2639 5.0kb downstream 5.0kb downstream 8540 true scaffold_2: 13591366-13599905 Capsella rubella
Carub.0002s2639 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 13591366-13596365 Capsella rubella
Carub.0002s2639 10.0kb upstream 10.0kb upstream 13540 true scaffold_2: 13596366-13609905 Capsella rubella
Carub.0002s2639 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 13599906-13609905 Capsella rubella
Carub.0002s2639 10.0kb downstream 10.0kb downstream 13540 true scaffold_2: 13586366-13599905 Capsella rubella
Carub.0002s2639 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 13586366-13596365 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360687 5261 Brassicaceae View MSA
123836882 5264 Brassicales-Malvales View MSA
124346127 5266 SBM View MSA
124243370 5268 Malvidae View MSA
124063810 5270 Rosid View MSA
123738168 5271 Pentapetalae View MSA
122792653 5272 Eudicot View MSA
122042179 5273 Angiosperm View MSA
121345581 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain