Gene : Carub.0002s2641 C. rubella v1.1
Defline:  (1 of 1) PTHR11406//PTHR11406:SF9 - PHOSPHOGLYCERATE KINASE // PHOSPHOGLYCERATE KINASE Genomic Order:  2641
Name:  ? Carub.0002s2641 Secondary Identifier:  ? PAC:39245660
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Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ANAEROFRUCAT-PWY Capsella rubella pathologic  
Crubella ANAGLYCOLYSIS-PWY Capsella rubella pathologic  
Crubella CALVIN-PWY Capsella rubella pathologic  
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-1042 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY66-399 Capsella rubella pathologic  
Crubella SUCSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s2641 0.5kb upstream 0.5kb upstream 2739 true scaffold_2: 13605095-13607833 Capsella rubella
Carub.0002s2641 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 13607334-13607833 Capsella rubella
Carub.0002s2641 0.5kb downstream 0.5kb downstream 2739 true scaffold_2: 13604595-13607333 Capsella rubella
Carub.0002s2641 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 13604595-13605094 Capsella rubella
Carub.0002s2641 1.0kb upstream 1.0kb upstream 3239 true scaffold_2: 13605095-13608333 Capsella rubella
Carub.0002s2641 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 13607334-13608333 Capsella rubella
Carub.0002s2641 1.0kb downstream 1.0kb downstream 3239 true scaffold_2: 13604095-13607333 Capsella rubella
Carub.0002s2641 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 13604095-13605094 Capsella rubella
Carub.0002s2641 2.0kb upstream 2.0kb upstream 4239 true scaffold_2: 13605095-13609333 Capsella rubella
Carub.0002s2641 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 13607334-13609333 Capsella rubella
Carub.0002s2641 2.0kb downstream 2.0kb downstream 4239 true scaffold_2: 13603095-13607333 Capsella rubella
Carub.0002s2641 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 13603095-13605094 Capsella rubella
Carub.0002s2641 5.0kb upstream 5.0kb upstream 7239 true scaffold_2: 13605095-13612333 Capsella rubella
Carub.0002s2641 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 13607334-13612333 Capsella rubella
Carub.0002s2641 5.0kb downstream 5.0kb downstream 7239 true scaffold_2: 13600095-13607333 Capsella rubella
Carub.0002s2641 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 13600095-13605094 Capsella rubella
Carub.0002s2641 10.0kb upstream 10.0kb upstream 12239 true scaffold_2: 13605095-13617333 Capsella rubella
Carub.0002s2641 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 13607334-13617333 Capsella rubella
Carub.0002s2641 10.0kb downstream 10.0kb downstream 12239 true scaffold_2: 13595095-13607333 Capsella rubella
Carub.0002s2641 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 13595095-13605094 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040878 5273 Angiosperm View MSA
122370985 5261 Brassicaceae View MSA
123830629 5264 Brassicales-Malvales View MSA
124340195 5266 SBM View MSA
124253761 5268 Malvidae View MSA
124067355 5270 Rosid View MSA
123751254 5271 Pentapetalae View MSA
122790171 5272 Eudicot View MSA
121348563 5274 Embryophyte View MSA
123423936 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain