Gene : Carub.0002s2543 C. rubella v1.1
Defline:  (1 of 3) PTHR10788//PTHR10788:SF6 - TREHALOSE-6-PHOSPHATE SYNTHASE // BCDNA.GH08860 Genomic Order:  2543
Name:  ? Carub.0002s2543 Secondary Identifier:  ? PAC:39245865
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s2543 0.5kb upstream 0.5kb upstream 7063 true scaffold_2: 13226788-13233850 Capsella rubella
Carub.0002s2543 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 13233351-13233850 Capsella rubella
Carub.0002s2543 0.5kb downstream 0.5kb downstream 7063 true scaffold_2: 13226288-13233350 Capsella rubella
Carub.0002s2543 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 13226288-13226787 Capsella rubella
Carub.0002s2543 1.0kb upstream 1.0kb upstream 7563 true scaffold_2: 13226788-13234350 Capsella rubella
Carub.0002s2543 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 13233351-13234350 Capsella rubella
Carub.0002s2543 1.0kb downstream 1.0kb downstream 7563 true scaffold_2: 13225788-13233350 Capsella rubella
Carub.0002s2543 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 13225788-13226787 Capsella rubella
Carub.0002s2543 2.0kb upstream 2.0kb upstream 8563 true scaffold_2: 13226788-13235350 Capsella rubella
Carub.0002s2543 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 13233351-13235350 Capsella rubella
Carub.0002s2543 2.0kb downstream 2.0kb downstream 8563 true scaffold_2: 13224788-13233350 Capsella rubella
Carub.0002s2543 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 13224788-13226787 Capsella rubella
Carub.0002s2543 5.0kb upstream 5.0kb upstream 11563 true scaffold_2: 13226788-13238350 Capsella rubella
Carub.0002s2543 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 13233351-13238350 Capsella rubella
Carub.0002s2543 5.0kb downstream 5.0kb downstream 11563 true scaffold_2: 13221788-13233350 Capsella rubella
Carub.0002s2543 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 13221788-13226787 Capsella rubella
Carub.0002s2543 10.0kb upstream 10.0kb upstream 16563 true scaffold_2: 13226788-13243350 Capsella rubella
Carub.0002s2543 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 13233351-13243350 Capsella rubella
Carub.0002s2543 10.0kb downstream 10.0kb downstream 16563 true scaffold_2: 13216788-13233350 Capsella rubella
Carub.0002s2543 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 13216788-13226787 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376046 5261 Brassicaceae View MSA
123833374 5264 Brassicales-Malvales View MSA
124350431 5266 SBM View MSA
124251076 5268 Malvidae View MSA
124068150 5270 Rosid View MSA
123743549 5271 Pentapetalae View MSA
122786791 5272 Eudicot View MSA
122045463 5273 Angiosperm View MSA
121344657 5274 Embryophyte View MSA
123428106 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain