Gene : Carub.0002s2115 C. rubella v1.1
Defline:  (1 of 5) K08238 - xyloglucan 6-xylosyltransferase [EC:2.4.2.39] Xyl a1-6 Glc (XXT) Genomic Order:  2115
Name:  ? Carub.0002s2115 Secondary Identifier:  ? PAC:39244755
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5936 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s2115 0.5kb upstream 0.5kb upstream 1874 true scaffold_2: 11535863-11537736 Capsella rubella
Carub.0002s2115 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 11535863-11536362 Capsella rubella
Carub.0002s2115 0.5kb downstream 0.5kb downstream 1874 true scaffold_2: 11536363-11538236 Capsella rubella
Carub.0002s2115 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 11537737-11538236 Capsella rubella
Carub.0002s2115 1.0kb upstream 1.0kb upstream 2374 true scaffold_2: 11535363-11537736 Capsella rubella
Carub.0002s2115 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 11535363-11536362 Capsella rubella
Carub.0002s2115 1.0kb downstream 1.0kb downstream 2374 true scaffold_2: 11536363-11538736 Capsella rubella
Carub.0002s2115 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 11537737-11538736 Capsella rubella
Carub.0002s2115 2.0kb upstream 2.0kb upstream 3374 true scaffold_2: 11534363-11537736 Capsella rubella
Carub.0002s2115 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 11534363-11536362 Capsella rubella
Carub.0002s2115 2.0kb downstream 2.0kb downstream 3374 true scaffold_2: 11536363-11539736 Capsella rubella
Carub.0002s2115 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 11537737-11539736 Capsella rubella
Carub.0002s2115 5.0kb upstream 5.0kb upstream 6374 true scaffold_2: 11531363-11537736 Capsella rubella
Carub.0002s2115 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 11531363-11536362 Capsella rubella
Carub.0002s2115 5.0kb downstream 5.0kb downstream 6374 true scaffold_2: 11536363-11542736 Capsella rubella
Carub.0002s2115 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 11537737-11542736 Capsella rubella
Carub.0002s2115 10.0kb upstream 10.0kb upstream 11374 true scaffold_2: 11526363-11537736 Capsella rubella
Carub.0002s2115 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 11526363-11536362 Capsella rubella
Carub.0002s2115 10.0kb downstream 10.0kb downstream 11374 true scaffold_2: 11536363-11547736 Capsella rubella
Carub.0002s2115 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 11537737-11547736 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374059 5261 Brassicaceae View MSA
123839780 5264 Brassicales-Malvales View MSA
124338371 5266 SBM View MSA
124251626 5268 Malvidae View MSA
124066918 5270 Rosid View MSA
123741049 5271 Pentapetalae View MSA
122787674 5272 Eudicot View MSA
122047290 5273 Angiosperm View MSA
121349054 5274 Embryophyte View MSA
123428220 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain