Gene : Carub.0002s2330 C. rubella v1.1
Defline:  (1 of 1) PTHR21049:SF1 - DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 1A Genomic Order:  2330
Name:  ? Carub.0002s2330 Secondary Identifier:  ? PAC:39243172
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s2330 0.5kb upstream 0.5kb upstream 3938 true scaffold_2: 12316803-12320740 Capsella rubella
Carub.0002s2330 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 12320241-12320740 Capsella rubella
Carub.0002s2330 0.5kb downstream 0.5kb downstream 3938 true scaffold_2: 12316303-12320240 Capsella rubella
Carub.0002s2330 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 12316303-12316802 Capsella rubella
Carub.0002s2330 1.0kb upstream 1.0kb upstream 4438 true scaffold_2: 12316803-12321240 Capsella rubella
Carub.0002s2330 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 12320241-12321240 Capsella rubella
Carub.0002s2330 1.0kb downstream 1.0kb downstream 4438 true scaffold_2: 12315803-12320240 Capsella rubella
Carub.0002s2330 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 12315803-12316802 Capsella rubella
Carub.0002s2330 2.0kb upstream 2.0kb upstream 5438 true scaffold_2: 12316803-12322240 Capsella rubella
Carub.0002s2330 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 12320241-12322240 Capsella rubella
Carub.0002s2330 2.0kb downstream 2.0kb downstream 5438 true scaffold_2: 12314803-12320240 Capsella rubella
Carub.0002s2330 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 12314803-12316802 Capsella rubella
Carub.0002s2330 5.0kb upstream 5.0kb upstream 8438 true scaffold_2: 12316803-12325240 Capsella rubella
Carub.0002s2330 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 12320241-12325240 Capsella rubella
Carub.0002s2330 5.0kb downstream 5.0kb downstream 8438 true scaffold_2: 12311803-12320240 Capsella rubella
Carub.0002s2330 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 12311803-12316802 Capsella rubella
Carub.0002s2330 10.0kb upstream 10.0kb upstream 13438 true scaffold_2: 12316803-12330240 Capsella rubella
Carub.0002s2330 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 12320241-12330240 Capsella rubella
Carub.0002s2330 10.0kb downstream 10.0kb downstream 13438 true scaffold_2: 12306803-12320240 Capsella rubella
Carub.0002s2330 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 12306803-12316802 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373711 5261 Brassicaceae View MSA
123827563 5264 Brassicales-Malvales View MSA
124338985 5266 SBM View MSA
124237474 5268 Malvidae View MSA
124068967 5270 Rosid View MSA
123737223 5271 Pentapetalae View MSA
122791942 5272 Eudicot View MSA
122045839 5273 Angiosperm View MSA
121344517 5274 Embryophyte View MSA
123425585 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain