Gene : Carub.0002s1813 C. rubella v1.1
Defline:  (1 of 1) PTHR22835//PTHR22835:SF168 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1813
Name:  ? Carub.0002s1813 Secondary Identifier:  ? PAC:39245310
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella LIPAS-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1813 0.5kb upstream 0.5kb upstream 2329 true scaffold_2: 10390032-10392360 Capsella rubella
Carub.0002s1813 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 10390032-10390531 Capsella rubella
Carub.0002s1813 0.5kb downstream 0.5kb downstream 2329 true scaffold_2: 10390532-10392860 Capsella rubella
Carub.0002s1813 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 10392361-10392860 Capsella rubella
Carub.0002s1813 1.0kb upstream 1.0kb upstream 2829 true scaffold_2: 10389532-10392360 Capsella rubella
Carub.0002s1813 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 10389532-10390531 Capsella rubella
Carub.0002s1813 1.0kb downstream 1.0kb downstream 2829 true scaffold_2: 10390532-10393360 Capsella rubella
Carub.0002s1813 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 10392361-10393360 Capsella rubella
Carub.0002s1813 2.0kb upstream 2.0kb upstream 3829 true scaffold_2: 10388532-10392360 Capsella rubella
Carub.0002s1813 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 10388532-10390531 Capsella rubella
Carub.0002s1813 2.0kb downstream 2.0kb downstream 3829 true scaffold_2: 10390532-10394360 Capsella rubella
Carub.0002s1813 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 10392361-10394360 Capsella rubella
Carub.0002s1813 5.0kb upstream 5.0kb upstream 6829 true scaffold_2: 10385532-10392360 Capsella rubella
Carub.0002s1813 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 10385532-10390531 Capsella rubella
Carub.0002s1813 5.0kb downstream 5.0kb downstream 6829 true scaffold_2: 10390532-10397360 Capsella rubella
Carub.0002s1813 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 10392361-10397360 Capsella rubella
Carub.0002s1813 10.0kb upstream 10.0kb upstream 11829 true scaffold_2: 10380532-10392360 Capsella rubella
Carub.0002s1813 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 10380532-10390531 Capsella rubella
Carub.0002s1813 10.0kb downstream 10.0kb downstream 11829 true scaffold_2: 10390532-10402360 Capsella rubella
Carub.0002s1813 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 10392361-10402360 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381051 5261 Brassicaceae View MSA
123834355 5264 Brassicales-Malvales View MSA
124343161 5266 SBM View MSA
124243693 5268 Malvidae View MSA
124069396 5270 Rosid View MSA
123753785 5271 Pentapetalae View MSA
122797352 5272 Eudicot View MSA
122051674 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain