Gene : Carub.0002s1820 C. rubella v1.1
Defline:  (1 of 1) PTHR23344:SF28 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 Genomic Order:  1820
Name:  ? Carub.0002s1820 Secondary Identifier:  ? PAC:39245199
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7409 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1820 0.5kb upstream 0.5kb upstream 2446 true scaffold_2: 10413675-10416120 Capsella rubella
Carub.0002s1820 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 10415621-10416120 Capsella rubella
Carub.0002s1820 0.5kb downstream 0.5kb downstream 2446 true scaffold_2: 10413175-10415620 Capsella rubella
Carub.0002s1820 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 10413175-10413674 Capsella rubella
Carub.0002s1820 1.0kb upstream 1.0kb upstream 2946 true scaffold_2: 10413675-10416620 Capsella rubella
Carub.0002s1820 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 10415621-10416620 Capsella rubella
Carub.0002s1820 1.0kb downstream 1.0kb downstream 2946 true scaffold_2: 10412675-10415620 Capsella rubella
Carub.0002s1820 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 10412675-10413674 Capsella rubella
Carub.0002s1820 2.0kb upstream 2.0kb upstream 3946 true scaffold_2: 10413675-10417620 Capsella rubella
Carub.0002s1820 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 10415621-10417620 Capsella rubella
Carub.0002s1820 2.0kb downstream 2.0kb downstream 3946 true scaffold_2: 10411675-10415620 Capsella rubella
Carub.0002s1820 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 10411675-10413674 Capsella rubella
Carub.0002s1820 5.0kb upstream 5.0kb upstream 6946 true scaffold_2: 10413675-10420620 Capsella rubella
Carub.0002s1820 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 10415621-10420620 Capsella rubella
Carub.0002s1820 5.0kb downstream 5.0kb downstream 6946 true scaffold_2: 10408675-10415620 Capsella rubella
Carub.0002s1820 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 10408675-10413674 Capsella rubella
Carub.0002s1820 10.0kb upstream 10.0kb upstream 11946 true scaffold_2: 10413675-10425620 Capsella rubella
Carub.0002s1820 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 10415621-10425620 Capsella rubella
Carub.0002s1820 10.0kb downstream 10.0kb downstream 11946 true scaffold_2: 10403675-10415620 Capsella rubella
Carub.0002s1820 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 10403675-10413674 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367757 5261 Brassicaceae View MSA
123834207 5264 Brassicales-Malvales View MSA
124341346 5266 SBM View MSA
124240087 5268 Malvidae View MSA
124067594 5270 Rosid View MSA
123739367 5271 Pentapetalae View MSA
122793263 5272 Eudicot View MSA
122047219 5273 Angiosperm View MSA
121349016 5274 Embryophyte View MSA
123427418 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain