Gene : Carub.0002s2083 C. rubella v1.1
Defline:  (1 of 3) K01649 - 2-isopropylmalate synthase (leuA) Genomic Order:  2083
Name:  ? Carub.0002s2083 Secondary Identifier:  ? PAC:39243240
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella BRANCHED-CHAIN-AA-SYN-PWY Capsella rubella pathologic  
Crubella LEUSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s2083 0.5kb upstream 0.5kb upstream 4168 true scaffold_2: 11430754-11434921 Capsella rubella
Carub.0002s2083 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 11430754-11431253 Capsella rubella
Carub.0002s2083 0.5kb downstream 0.5kb downstream 4168 true scaffold_2: 11431254-11435421 Capsella rubella
Carub.0002s2083 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 11434922-11435421 Capsella rubella
Carub.0002s2083 1.0kb upstream 1.0kb upstream 4668 true scaffold_2: 11430254-11434921 Capsella rubella
Carub.0002s2083 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 11430254-11431253 Capsella rubella
Carub.0002s2083 1.0kb downstream 1.0kb downstream 4668 true scaffold_2: 11431254-11435921 Capsella rubella
Carub.0002s2083 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 11434922-11435921 Capsella rubella
Carub.0002s2083 2.0kb upstream 2.0kb upstream 5668 true scaffold_2: 11429254-11434921 Capsella rubella
Carub.0002s2083 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 11429254-11431253 Capsella rubella
Carub.0002s2083 2.0kb downstream 2.0kb downstream 5668 true scaffold_2: 11431254-11436921 Capsella rubella
Carub.0002s2083 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 11434922-11436921 Capsella rubella
Carub.0002s2083 5.0kb upstream 5.0kb upstream 8668 true scaffold_2: 11426254-11434921 Capsella rubella
Carub.0002s2083 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 11426254-11431253 Capsella rubella
Carub.0002s2083 5.0kb downstream 5.0kb downstream 8668 true scaffold_2: 11431254-11439921 Capsella rubella
Carub.0002s2083 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 11434922-11439921 Capsella rubella
Carub.0002s2083 10.0kb upstream 10.0kb upstream 13668 true scaffold_2: 11421254-11434921 Capsella rubella
Carub.0002s2083 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 11421254-11431253 Capsella rubella
Carub.0002s2083 10.0kb downstream 10.0kb downstream 13668 true scaffold_2: 11431254-11444921 Capsella rubella
Carub.0002s2083 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 11434922-11444921 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376222 5261 Brassicaceae View MSA
123837144 5264 Brassicales-Malvales View MSA
124322248 5266 SBM View MSA
124251393 5268 Malvidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain