Gene : Carub.0006s0821 C. rubella v1.1
Defline:  (1 of 2) PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  821
Name:  ? Carub.0006s0821 Secondary Identifier:  ? PAC:39247761
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s0821 0.5kb upstream 0.5kb upstream 1739 true scaffold_6: 2985416-2987154 Capsella rubella
Carub.0006s0821 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 2986655-2987154 Capsella rubella
Carub.0006s0821 0.5kb downstream 0.5kb downstream 1739 true scaffold_6: 2984916-2986654 Capsella rubella
Carub.0006s0821 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 2984916-2985415 Capsella rubella
Carub.0006s0821 1.0kb upstream 1.0kb upstream 2239 true scaffold_6: 2985416-2987654 Capsella rubella
Carub.0006s0821 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 2986655-2987654 Capsella rubella
Carub.0006s0821 1.0kb downstream 1.0kb downstream 2239 true scaffold_6: 2984416-2986654 Capsella rubella
Carub.0006s0821 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 2984416-2985415 Capsella rubella
Carub.0006s0821 2.0kb upstream 2.0kb upstream 3239 true scaffold_6: 2985416-2988654 Capsella rubella
Carub.0006s0821 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 2986655-2988654 Capsella rubella
Carub.0006s0821 2.0kb downstream 2.0kb downstream 3239 true scaffold_6: 2983416-2986654 Capsella rubella
Carub.0006s0821 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 2983416-2985415 Capsella rubella
Carub.0006s0821 5.0kb upstream 5.0kb upstream 6239 true scaffold_6: 2985416-2991654 Capsella rubella
Carub.0006s0821 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 2986655-2991654 Capsella rubella
Carub.0006s0821 5.0kb downstream 5.0kb downstream 6239 true scaffold_6: 2980416-2986654 Capsella rubella
Carub.0006s0821 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 2980416-2985415 Capsella rubella
Carub.0006s0821 10.0kb upstream 10.0kb upstream 11239 true scaffold_6: 2985416-2996654 Capsella rubella
Carub.0006s0821 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 2986655-2996654 Capsella rubella
Carub.0006s0821 10.0kb downstream 10.0kb downstream 11239 true scaffold_6: 2975416-2986654 Capsella rubella
Carub.0006s0821 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 2975416-2985415 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381582 5261 Brassicaceae View MSA
123833487 5264 Brassicales-Malvales View MSA
124351138 5266 SBM View MSA
124239746 5268 Malvidae View MSA
124071729 5270 Rosid View MSA
123744205 5271 Pentapetalae View MSA
122785881 5272 Eudicot View MSA
122041845 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain