Gene : Carub.0008s0900 C. rubella v1.1
Defline:  (1 of 5) PTHR31707:SF13 - PECTINESTERASE/PECTINESTERASE INHIBITOR 21-RELATED Genomic Order:  900
Name:  ? Carub.0008s0900 Secondary Identifier:  ? PAC:39251644
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0008s0900 0.5kb upstream 0.5kb upstream 2598 true scaffold_8: 5801028-5803625 Capsella rubella
Carub.0008s0900 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 5803126-5803625 Capsella rubella
Carub.0008s0900 0.5kb downstream 0.5kb downstream 2598 true scaffold_8: 5800528-5803125 Capsella rubella
Carub.0008s0900 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 5800528-5801027 Capsella rubella
Carub.0008s0900 1.0kb upstream 1.0kb upstream 3098 true scaffold_8: 5801028-5804125 Capsella rubella
Carub.0008s0900 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 5803126-5804125 Capsella rubella
Carub.0008s0900 1.0kb downstream 1.0kb downstream 3098 true scaffold_8: 5800028-5803125 Capsella rubella
Carub.0008s0900 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 5800028-5801027 Capsella rubella
Carub.0008s0900 2.0kb upstream 2.0kb upstream 4098 true scaffold_8: 5801028-5805125 Capsella rubella
Carub.0008s0900 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 5803126-5805125 Capsella rubella
Carub.0008s0900 2.0kb downstream 2.0kb downstream 4098 true scaffold_8: 5799028-5803125 Capsella rubella
Carub.0008s0900 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 5799028-5801027 Capsella rubella
Carub.0008s0900 5.0kb upstream 5.0kb upstream 7098 true scaffold_8: 5801028-5808125 Capsella rubella
Carub.0008s0900 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 5803126-5808125 Capsella rubella
Carub.0008s0900 5.0kb downstream 5.0kb downstream 7098 true scaffold_8: 5796028-5803125 Capsella rubella
Carub.0008s0900 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 5796028-5801027 Capsella rubella
Carub.0008s0900 10.0kb upstream 10.0kb upstream 12098 true scaffold_8: 5801028-5813125 Capsella rubella
Carub.0008s0900 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 5803126-5813125 Capsella rubella
Carub.0008s0900 10.0kb downstream 10.0kb downstream 12098 true scaffold_8: 5791028-5803125 Capsella rubella
Carub.0008s0900 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 5791028-5801027 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365584 5261 Brassicaceae View MSA
123840524 5264 Brassicales-Malvales View MSA
124341579 5266 SBM View MSA
124251483 5268 Malvidae View MSA
124071187 5270 Rosid View MSA
123743579 5271 Pentapetalae View MSA
122788004 5272 Eudicot View MSA
122050714 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain