Gene : Carub.0002s0087 C. rubella v1.1
Defline:  (1 of 1) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  87
Name:  ? Carub.0002s0087 Secondary Identifier:  ? PAC:39244622
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7560 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s0087 0.5kb upstream 0.5kb upstream 2194 true scaffold_2: 352968-355161 Capsella rubella
Carub.0002s0087 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 352968-353467 Capsella rubella
Carub.0002s0087 0.5kb downstream 0.5kb downstream 2194 true scaffold_2: 353468-355661 Capsella rubella
Carub.0002s0087 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 355162-355661 Capsella rubella
Carub.0002s0087 1.0kb upstream 1.0kb upstream 2694 true scaffold_2: 352468-355161 Capsella rubella
Carub.0002s0087 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 352468-353467 Capsella rubella
Carub.0002s0087 1.0kb downstream 1.0kb downstream 2694 true scaffold_2: 353468-356161 Capsella rubella
Carub.0002s0087 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 355162-356161 Capsella rubella
Carub.0002s0087 2.0kb upstream 2.0kb upstream 3694 true scaffold_2: 351468-355161 Capsella rubella
Carub.0002s0087 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 351468-353467 Capsella rubella
Carub.0002s0087 2.0kb downstream 2.0kb downstream 3694 true scaffold_2: 353468-357161 Capsella rubella
Carub.0002s0087 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 355162-357161 Capsella rubella
Carub.0002s0087 5.0kb upstream 5.0kb upstream 6694 true scaffold_2: 348468-355161 Capsella rubella
Carub.0002s0087 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 348468-353467 Capsella rubella
Carub.0002s0087 5.0kb downstream 5.0kb downstream 6694 true scaffold_2: 353468-360161 Capsella rubella
Carub.0002s0087 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 355162-360161 Capsella rubella
Carub.0002s0087 10.0kb upstream 10.0kb upstream 11694 true scaffold_2: 343468-355161 Capsella rubella
Carub.0002s0087 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 343468-353467 Capsella rubella
Carub.0002s0087 10.0kb downstream 10.0kb downstream 11694 true scaffold_2: 353468-365161 Capsella rubella
Carub.0002s0087 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 355162-365161 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365152 5261 Brassicaceae View MSA
123835150 5264 Brassicales-Malvales View MSA
124346414 5266 SBM View MSA
124238483 5268 Malvidae View MSA
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain