Gene : Carub.0002s0217 C. rubella v1.1
Defline:  (1 of 1) PTHR10638//PTHR10638:SF38 - COPPER AMINE OXIDASE // PRIMARY AMINE OXIDASE Genomic Order:  217
Name:  ? Carub.0002s0217 Secondary Identifier:  ? PAC:39244702
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5751 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s0217 0.5kb upstream 0.5kb upstream 3743 true scaffold_2: 907275-911017 Capsella rubella
Carub.0002s0217 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 907275-907774 Capsella rubella
Carub.0002s0217 0.5kb downstream 0.5kb downstream 3743 true scaffold_2: 907775-911517 Capsella rubella
Carub.0002s0217 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 911018-911517 Capsella rubella
Carub.0002s0217 1.0kb upstream 1.0kb upstream 4243 true scaffold_2: 906775-911017 Capsella rubella
Carub.0002s0217 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 906775-907774 Capsella rubella
Carub.0002s0217 1.0kb downstream 1.0kb downstream 4243 true scaffold_2: 907775-912017 Capsella rubella
Carub.0002s0217 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 911018-912017 Capsella rubella
Carub.0002s0217 2.0kb upstream 2.0kb upstream 5243 true scaffold_2: 905775-911017 Capsella rubella
Carub.0002s0217 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 905775-907774 Capsella rubella
Carub.0002s0217 2.0kb downstream 2.0kb downstream 5243 true scaffold_2: 907775-913017 Capsella rubella
Carub.0002s0217 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 911018-913017 Capsella rubella
Carub.0002s0217 5.0kb upstream 5.0kb upstream 8243 true scaffold_2: 902775-911017 Capsella rubella
Carub.0002s0217 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 902775-907774 Capsella rubella
Carub.0002s0217 5.0kb downstream 5.0kb downstream 8243 true scaffold_2: 907775-916017 Capsella rubella
Carub.0002s0217 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 911018-916017 Capsella rubella
Carub.0002s0217 10.0kb upstream 10.0kb upstream 13243 true scaffold_2: 897775-911017 Capsella rubella
Carub.0002s0217 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 897775-907774 Capsella rubella
Carub.0002s0217 10.0kb downstream 10.0kb downstream 13243 true scaffold_2: 907775-921017 Capsella rubella
Carub.0002s0217 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 911018-921017 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378095 5261 Brassicaceae View MSA
123837206 5264 Brassicales-Malvales View MSA
124322260 5266 SBM View MSA
124247768 5268 Malvidae View MSA
124066432 5270 Rosid View MSA
123751770 5271 Pentapetalae View MSA
122795506 5272 Eudicot View MSA
122049910 5273 Angiosperm View MSA
123428923 5275 Viridiplantae View MSA
121349913 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain