Gene : Carub.0002s0215 C. rubella v1.1
Defline:  (1 of 1) PTHR10742:SF246 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1 Genomic Order:  215
Name:  ? Carub.0002s0215 Secondary Identifier:  ? PAC:39245187
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6441 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s0215 0.5kb upstream 0.5kb upstream 3098 true scaffold_2: 902092-905189 Capsella rubella
Carub.0002s0215 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 902092-902591 Capsella rubella
Carub.0002s0215 0.5kb downstream 0.5kb downstream 3098 true scaffold_2: 902592-905689 Capsella rubella
Carub.0002s0215 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 905190-905689 Capsella rubella
Carub.0002s0215 1.0kb upstream 1.0kb upstream 3598 true scaffold_2: 901592-905189 Capsella rubella
Carub.0002s0215 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 901592-902591 Capsella rubella
Carub.0002s0215 1.0kb downstream 1.0kb downstream 3598 true scaffold_2: 902592-906189 Capsella rubella
Carub.0002s0215 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 905190-906189 Capsella rubella
Carub.0002s0215 2.0kb upstream 2.0kb upstream 4598 true scaffold_2: 900592-905189 Capsella rubella
Carub.0002s0215 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 900592-902591 Capsella rubella
Carub.0002s0215 2.0kb downstream 2.0kb downstream 4598 true scaffold_2: 902592-907189 Capsella rubella
Carub.0002s0215 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 905190-907189 Capsella rubella
Carub.0002s0215 5.0kb upstream 5.0kb upstream 7598 true scaffold_2: 897592-905189 Capsella rubella
Carub.0002s0215 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 897592-902591 Capsella rubella
Carub.0002s0215 5.0kb downstream 5.0kb downstream 7598 true scaffold_2: 902592-910189 Capsella rubella
Carub.0002s0215 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 905190-910189 Capsella rubella
Carub.0002s0215 10.0kb upstream 10.0kb upstream 12598 true scaffold_2: 892592-905189 Capsella rubella
Carub.0002s0215 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 892592-902591 Capsella rubella
Carub.0002s0215 10.0kb downstream 10.0kb downstream 12598 true scaffold_2: 902592-915189 Capsella rubella
Carub.0002s0215 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 905190-915189 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376165 5261 Brassicaceae View MSA
123829326 5264 Brassicales-Malvales View MSA
124336608 5266 SBM View MSA
124249535 5268 Malvidae View MSA
124062162 5270 Rosid View MSA
123738234 5271 Pentapetalae View MSA
122786001 5272 Eudicot View MSA
122043910 5273 Angiosperm View MSA
121310209 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain