Gene : Carub.0025s0004 C. rubella v1.1
Defline:  (1 of 6) PF16900 - Replication protein A OB domain (REPA_OB_2) Genomic Order:  4
Name:  ? Carub.0025s0004 Secondary Identifier:  ? PAC:39253183
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0025s0004 0.5kb upstream 0.5kb upstream 2704 true scaffold_25: 32176-34879 Capsella rubella
Carub.0025s0004 0.5kb upstream 0.5kb upstream 500 false scaffold_25: 34380-34879 Capsella rubella
Carub.0025s0004 0.5kb downstream 0.5kb downstream 2704 true scaffold_25: 31676-34379 Capsella rubella
Carub.0025s0004 0.5kb downstream 0.5kb downstream 500 false scaffold_25: 31676-32175 Capsella rubella
Carub.0025s0004 1.0kb upstream 1.0kb upstream 3204 true scaffold_25: 32176-35379 Capsella rubella
Carub.0025s0004 1.0kb upstream 1.0kb upstream 1000 false scaffold_25: 34380-35379 Capsella rubella
Carub.0025s0004 1.0kb downstream 1.0kb downstream 3204 true scaffold_25: 31176-34379 Capsella rubella
Carub.0025s0004 1.0kb downstream 1.0kb downstream 1000 false scaffold_25: 31176-32175 Capsella rubella
Carub.0025s0004 2.0kb upstream 2.0kb upstream 4204 true scaffold_25: 32176-36379 Capsella rubella
Carub.0025s0004 2.0kb upstream 2.0kb upstream 2000 false scaffold_25: 34380-36379 Capsella rubella
Carub.0025s0004 2.0kb downstream 2.0kb downstream 4204 true scaffold_25: 30176-34379 Capsella rubella
Carub.0025s0004 2.0kb downstream 2.0kb downstream 2000 false scaffold_25: 30176-32175 Capsella rubella
Carub.0025s0004 5.0kb upstream 5.0kb upstream 7204 true scaffold_25: 32176-39379 Capsella rubella
Carub.0025s0004 5.0kb upstream 5.0kb upstream 5000 false scaffold_25: 34380-39379 Capsella rubella
Carub.0025s0004 5.0kb downstream 5.0kb downstream 7204 true scaffold_25: 27176-34379 Capsella rubella
Carub.0025s0004 5.0kb downstream 5.0kb downstream 5000 false scaffold_25: 27176-32175 Capsella rubella
Carub.0025s0004 10.0kb upstream 10.0kb upstream 12204 true scaffold_25: 32176-44379 Capsella rubella
Carub.0025s0004 10.0kb upstream 10.0kb upstream 10000 false scaffold_25: 34380-44379 Capsella rubella
Carub.0025s0004 10.0kb downstream 10.0kb downstream 12204 true scaffold_25: 22176-34379 Capsella rubella
Carub.0025s0004 10.0kb downstream 10.0kb downstream 10000 false scaffold_25: 22176-32175 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029830 5273 Angiosperm View MSA
122338917 5261 Brassicaceae View MSA
123779436 5264 Brassicales-Malvales View MSA
124277760 5266 SBM View MSA
124132928 5268 Malvidae View MSA
124073687 5270 Rosid View MSA
123753150 5271 Pentapetalae View MSA
122797947 5272 Eudicot View MSA
121351580 5274 Embryophyte View MSA
123426292 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain