Gene : Carub.0007s3704 C. rubella v1.1
Defline:  (1 of 6) K01883 - cysteinyl-tRNA synthetase (CARS, cysS) Genomic Order:  3704
Name:  ? Carub.0007s3704 Secondary Identifier:  ? PAC:39235847
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s3704 0.5kb upstream 0.5kb upstream 3353 true scaffold_7: 16968411-16971763 Capsella rubella
Carub.0007s3704 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 16968411-16968910 Capsella rubella
Carub.0007s3704 0.5kb downstream 0.5kb downstream 3353 true scaffold_7: 16968911-16972263 Capsella rubella
Carub.0007s3704 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 16971764-16972263 Capsella rubella
Carub.0007s3704 1.0kb upstream 1.0kb upstream 3853 true scaffold_7: 16967911-16971763 Capsella rubella
Carub.0007s3704 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 16967911-16968910 Capsella rubella
Carub.0007s3704 1.0kb downstream 1.0kb downstream 3853 true scaffold_7: 16968911-16972763 Capsella rubella
Carub.0007s3704 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 16971764-16972763 Capsella rubella
Carub.0007s3704 2.0kb upstream 2.0kb upstream 4853 true scaffold_7: 16966911-16971763 Capsella rubella
Carub.0007s3704 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 16966911-16968910 Capsella rubella
Carub.0007s3704 2.0kb downstream 2.0kb downstream 4853 true scaffold_7: 16968911-16973763 Capsella rubella
Carub.0007s3704 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 16971764-16973763 Capsella rubella
Carub.0007s3704 5.0kb upstream 5.0kb upstream 7853 true scaffold_7: 16963911-16971763 Capsella rubella
Carub.0007s3704 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 16963911-16968910 Capsella rubella
Carub.0007s3704 5.0kb downstream 5.0kb downstream 7853 true scaffold_7: 16968911-16976763 Capsella rubella
Carub.0007s3704 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 16971764-16976763 Capsella rubella
Carub.0007s3704 10.0kb upstream 10.0kb upstream 12853 true scaffold_7: 16958911-16971763 Capsella rubella
Carub.0007s3704 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 16958911-16968910 Capsella rubella
Carub.0007s3704 10.0kb downstream 10.0kb downstream 12853 true scaffold_7: 16968911-16981763 Capsella rubella
Carub.0007s3704 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 16971764-16981763 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374120 5261 Brassicaceae View MSA
123830894 5264 Brassicales-Malvales View MSA
124340438 5266 SBM View MSA
124250049 5268 Malvidae View MSA
124063129 5270 Rosid View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain