Gene : Carub.0006s1189 C. rubella v1.1
Defline:  (1 of 1) K00559 - sterol 24-C-methyltransferase (E2.1.1.41, SMT1, ERG6) Genomic Order:  1189
Name:  ? Carub.0006s1189 Secondary Identifier:  ? PAC:39247021
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-2541 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1189 0.5kb upstream 0.5kb upstream 3717 true scaffold_6: 4422429-4426145 Capsella rubella
Carub.0006s1189 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4425646-4426145 Capsella rubella
Carub.0006s1189 0.5kb downstream 0.5kb downstream 3717 true scaffold_6: 4421929-4425645 Capsella rubella
Carub.0006s1189 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4421929-4422428 Capsella rubella
Carub.0006s1189 1.0kb upstream 1.0kb upstream 4217 true scaffold_6: 4422429-4426645 Capsella rubella
Carub.0006s1189 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4425646-4426645 Capsella rubella
Carub.0006s1189 1.0kb downstream 1.0kb downstream 4217 true scaffold_6: 4421429-4425645 Capsella rubella
Carub.0006s1189 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4421429-4422428 Capsella rubella
Carub.0006s1189 2.0kb upstream 2.0kb upstream 5217 true scaffold_6: 4422429-4427645 Capsella rubella
Carub.0006s1189 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4425646-4427645 Capsella rubella
Carub.0006s1189 2.0kb downstream 2.0kb downstream 5217 true scaffold_6: 4420429-4425645 Capsella rubella
Carub.0006s1189 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4420429-4422428 Capsella rubella
Carub.0006s1189 5.0kb upstream 5.0kb upstream 8217 true scaffold_6: 4422429-4430645 Capsella rubella
Carub.0006s1189 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4425646-4430645 Capsella rubella
Carub.0006s1189 5.0kb downstream 5.0kb downstream 8217 true scaffold_6: 4417429-4425645 Capsella rubella
Carub.0006s1189 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4417429-4422428 Capsella rubella
Carub.0006s1189 10.0kb upstream 10.0kb upstream 13217 true scaffold_6: 4422429-4435645 Capsella rubella
Carub.0006s1189 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4425646-4435645 Capsella rubella
Carub.0006s1189 10.0kb downstream 10.0kb downstream 13217 true scaffold_6: 4412429-4425645 Capsella rubella
Carub.0006s1189 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4412429-4422428 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041479 5273 Angiosperm View MSA
122372640 5261 Brassicaceae View MSA
123827735 5264 Brassicales-Malvales View MSA
124350111 5266 SBM View MSA
124248608 5268 Malvidae View MSA
124073694 5270 Rosid View MSA
123743908 5271 Pentapetalae View MSA
122793455 5272 Eudicot View MSA
121345470 5274 Embryophyte View MSA
123426805 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain