Gene : Carub.0007s3451 C. rubella v1.1
Defline:  (1 of 5) PTHR22835//PTHR22835:SF174 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN // GDSL ESTERASE/LIPASE 1-RELATED Genomic Order:  3451
Name:  ? Carub.0007s3451 Secondary Identifier:  ? PAC:39233295
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6303 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s3451 0.5kb upstream 0.5kb upstream 1960 true scaffold_7: 15757283-15759242 Capsella rubella
Carub.0007s3451 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 15758743-15759242 Capsella rubella
Carub.0007s3451 0.5kb downstream 0.5kb downstream 1960 true scaffold_7: 15756783-15758742 Capsella rubella
Carub.0007s3451 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 15756783-15757282 Capsella rubella
Carub.0007s3451 1.0kb upstream 1.0kb upstream 2460 true scaffold_7: 15757283-15759742 Capsella rubella
Carub.0007s3451 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 15758743-15759742 Capsella rubella
Carub.0007s3451 1.0kb downstream 1.0kb downstream 2460 true scaffold_7: 15756283-15758742 Capsella rubella
Carub.0007s3451 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 15756283-15757282 Capsella rubella
Carub.0007s3451 2.0kb upstream 2.0kb upstream 3460 true scaffold_7: 15757283-15760742 Capsella rubella
Carub.0007s3451 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 15758743-15760742 Capsella rubella
Carub.0007s3451 2.0kb downstream 2.0kb downstream 3460 true scaffold_7: 15755283-15758742 Capsella rubella
Carub.0007s3451 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 15755283-15757282 Capsella rubella
Carub.0007s3451 5.0kb upstream 5.0kb upstream 6460 true scaffold_7: 15757283-15763742 Capsella rubella
Carub.0007s3451 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 15758743-15763742 Capsella rubella
Carub.0007s3451 5.0kb downstream 5.0kb downstream 6460 true scaffold_7: 15752283-15758742 Capsella rubella
Carub.0007s3451 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 15752283-15757282 Capsella rubella
Carub.0007s3451 10.0kb upstream 10.0kb upstream 11460 true scaffold_7: 15757283-15768742 Capsella rubella
Carub.0007s3451 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 15758743-15768742 Capsella rubella
Carub.0007s3451 10.0kb downstream 10.0kb downstream 11460 true scaffold_7: 15747283-15758742 Capsella rubella
Carub.0007s3451 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 15747283-15757282 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343447 5261 Brassicaceae View MSA
123841664 5264 Brassicales-Malvales View MSA
124349446 5266 SBM View MSA
124250380 5268 Malvidae View MSA
124074404 5270 Rosid View MSA
123753785 5271 Pentapetalae View MSA
122797352 5272 Eudicot View MSA
122051674 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain