Gene : Carub.0002s1327 C. rubella v1.1
Defline:  (1 of 6) PTHR23344//PTHR23344:SF8 - GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE // GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE-LIKE PROTEIN-RELATED Genomic Order:  1327
Name:  ? Carub.0002s1327 Secondary Identifier:  ? PAC:39244746
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7409 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1327 0.5kb upstream 0.5kb upstream 3604 true scaffold_2: 8297516-8301119 Capsella rubella
Carub.0002s1327 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 8297516-8298015 Capsella rubella
Carub.0002s1327 0.5kb downstream 0.5kb downstream 3604 true scaffold_2: 8298016-8301619 Capsella rubella
Carub.0002s1327 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 8301120-8301619 Capsella rubella
Carub.0002s1327 1.0kb upstream 1.0kb upstream 4104 true scaffold_2: 8297016-8301119 Capsella rubella
Carub.0002s1327 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 8297016-8298015 Capsella rubella
Carub.0002s1327 1.0kb downstream 1.0kb downstream 4104 true scaffold_2: 8298016-8302119 Capsella rubella
Carub.0002s1327 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 8301120-8302119 Capsella rubella
Carub.0002s1327 2.0kb upstream 2.0kb upstream 5104 true scaffold_2: 8296016-8301119 Capsella rubella
Carub.0002s1327 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 8296016-8298015 Capsella rubella
Carub.0002s1327 2.0kb downstream 2.0kb downstream 5104 true scaffold_2: 8298016-8303119 Capsella rubella
Carub.0002s1327 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 8301120-8303119 Capsella rubella
Carub.0002s1327 5.0kb upstream 5.0kb upstream 8104 true scaffold_2: 8293016-8301119 Capsella rubella
Carub.0002s1327 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 8293016-8298015 Capsella rubella
Carub.0002s1327 5.0kb downstream 5.0kb downstream 8104 true scaffold_2: 8298016-8306119 Capsella rubella
Carub.0002s1327 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 8301120-8306119 Capsella rubella
Carub.0002s1327 10.0kb upstream 10.0kb upstream 13104 true scaffold_2: 8288016-8301119 Capsella rubella
Carub.0002s1327 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 8288016-8298015 Capsella rubella
Carub.0002s1327 10.0kb downstream 10.0kb downstream 13104 true scaffold_2: 8298016-8311119 Capsella rubella
Carub.0002s1327 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 8301120-8311119 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343425 5261 Brassicaceae View MSA
123783631 5264 Brassicales-Malvales View MSA
124281852 5266 SBM View MSA
124245225 5268 Malvidae View MSA
124064633 5270 Rosid View MSA
123747170 5271 Pentapetalae View MSA
122796977 5272 Eudicot View MSA
122046858 5273 Angiosperm View MSA
121349950 5274 Embryophyte View MSA
123381513 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain