Gene : Carub.0002s1390 C. rubella v1.1
Defline:  (1 of 1) PTHR11771//PTHR11771:SF60 - LIPOXYGENASE // LIPOXYGENASE 6, CHLOROPLASTIC Genomic Order:  1390
Name:  ? Carub.0002s1390 Secondary Identifier:  ? PAC:39244410
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5409 Capsella rubella pathologic  
Crubella PWY-5410 Capsella rubella pathologic  
Crubella PWY-735 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1390 0.5kb upstream 0.5kb upstream 4882 true scaffold_2: 8641132-8646013 Capsella rubella
Carub.0002s1390 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 8641132-8641631 Capsella rubella
Carub.0002s1390 0.5kb downstream 0.5kb downstream 4882 true scaffold_2: 8641632-8646513 Capsella rubella
Carub.0002s1390 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 8646014-8646513 Capsella rubella
Carub.0002s1390 1.0kb upstream 1.0kb upstream 5382 true scaffold_2: 8640632-8646013 Capsella rubella
Carub.0002s1390 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 8640632-8641631 Capsella rubella
Carub.0002s1390 1.0kb downstream 1.0kb downstream 5382 true scaffold_2: 8641632-8647013 Capsella rubella
Carub.0002s1390 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 8646014-8647013 Capsella rubella
Carub.0002s1390 2.0kb upstream 2.0kb upstream 6382 true scaffold_2: 8639632-8646013 Capsella rubella
Carub.0002s1390 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 8639632-8641631 Capsella rubella
Carub.0002s1390 2.0kb downstream 2.0kb downstream 6382 true scaffold_2: 8641632-8648013 Capsella rubella
Carub.0002s1390 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 8646014-8648013 Capsella rubella
Carub.0002s1390 5.0kb upstream 5.0kb upstream 9382 true scaffold_2: 8636632-8646013 Capsella rubella
Carub.0002s1390 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 8636632-8641631 Capsella rubella
Carub.0002s1390 5.0kb downstream 5.0kb downstream 9382 true scaffold_2: 8641632-8651013 Capsella rubella
Carub.0002s1390 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 8646014-8651013 Capsella rubella
Carub.0002s1390 10.0kb upstream 10.0kb upstream 14382 true scaffold_2: 8631632-8646013 Capsella rubella
Carub.0002s1390 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 8631632-8641631 Capsella rubella
Carub.0002s1390 10.0kb downstream 10.0kb downstream 14382 true scaffold_2: 8641632-8656013 Capsella rubella
Carub.0002s1390 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 8646014-8656013 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365902 5261 Brassicaceae View MSA
123839661 5264 Brassicales-Malvales View MSA
124340250 5266 SBM View MSA
124236928 5268 Malvidae View MSA
124068489 5270 Rosid View MSA
123750087 5271 Pentapetalae View MSA
122788853 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain