Gene : Carub.0002s1699 C. rubella v1.1
Defline:  (1 of 3) K00797 - spermidine synthase (speE, SRM) Genomic Order:  1699
Name:  ? Carub.0002s1699 Secondary Identifier:  ? PAC:39244343
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella BSUBPOLYAMSYN-PWY Capsella rubella pathologic  
Crubella PWY-7528 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1699 0.5kb upstream 0.5kb upstream 2845 true scaffold_2: 9949176-9952020 Capsella rubella
Carub.0002s1699 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 9951521-9952020 Capsella rubella
Carub.0002s1699 0.5kb downstream 0.5kb downstream 2845 true scaffold_2: 9948676-9951520 Capsella rubella
Carub.0002s1699 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 9948676-9949175 Capsella rubella
Carub.0002s1699 1.0kb upstream 1.0kb upstream 3345 true scaffold_2: 9949176-9952520 Capsella rubella
Carub.0002s1699 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 9951521-9952520 Capsella rubella
Carub.0002s1699 1.0kb downstream 1.0kb downstream 3345 true scaffold_2: 9948176-9951520 Capsella rubella
Carub.0002s1699 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 9948176-9949175 Capsella rubella
Carub.0002s1699 2.0kb upstream 2.0kb upstream 4345 true scaffold_2: 9949176-9953520 Capsella rubella
Carub.0002s1699 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 9951521-9953520 Capsella rubella
Carub.0002s1699 2.0kb downstream 2.0kb downstream 4345 true scaffold_2: 9947176-9951520 Capsella rubella
Carub.0002s1699 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 9947176-9949175 Capsella rubella
Carub.0002s1699 5.0kb upstream 5.0kb upstream 7345 true scaffold_2: 9949176-9956520 Capsella rubella
Carub.0002s1699 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 9951521-9956520 Capsella rubella
Carub.0002s1699 5.0kb downstream 5.0kb downstream 7345 true scaffold_2: 9944176-9951520 Capsella rubella
Carub.0002s1699 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 9944176-9949175 Capsella rubella
Carub.0002s1699 10.0kb upstream 10.0kb upstream 12345 true scaffold_2: 9949176-9961520 Capsella rubella
Carub.0002s1699 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 9951521-9961520 Capsella rubella
Carub.0002s1699 10.0kb downstream 10.0kb downstream 12345 true scaffold_2: 9939176-9951520 Capsella rubella
Carub.0002s1699 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 9939176-9949175 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343208 5261 Brassicaceae View MSA
123837275 5264 Brassicales-Malvales View MSA
124342552 5266 SBM View MSA
124246037 5268 Malvidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain