Gene : Carub.0002s1215 C. rubella v1.1
Defline:  (1 of 5) PTHR22849//PTHR22849:SF43 - WDSAM1 PROTEIN // U-BOX DOMAIN-CONTAINING PROTEIN 54-RELATED Genomic Order:  1215
Name:  ? Carub.0002s1215 Secondary Identifier:  ? PAC:39243315
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s1215 0.5kb upstream 0.5kb upstream 1790 true scaffold_2: 7777381-7779170 Capsella rubella
Carub.0002s1215 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 7777381-7777880 Capsella rubella
Carub.0002s1215 0.5kb downstream 0.5kb downstream 1790 true scaffold_2: 7777881-7779670 Capsella rubella
Carub.0002s1215 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 7779171-7779670 Capsella rubella
Carub.0002s1215 1.0kb upstream 1.0kb upstream 2290 true scaffold_2: 7776881-7779170 Capsella rubella
Carub.0002s1215 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 7776881-7777880 Capsella rubella
Carub.0002s1215 1.0kb downstream 1.0kb downstream 2290 true scaffold_2: 7777881-7780170 Capsella rubella
Carub.0002s1215 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 7779171-7780170 Capsella rubella
Carub.0002s1215 2.0kb upstream 2.0kb upstream 3290 true scaffold_2: 7775881-7779170 Capsella rubella
Carub.0002s1215 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 7775881-7777880 Capsella rubella
Carub.0002s1215 2.0kb downstream 2.0kb downstream 3290 true scaffold_2: 7777881-7781170 Capsella rubella
Carub.0002s1215 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 7779171-7781170 Capsella rubella
Carub.0002s1215 5.0kb upstream 5.0kb upstream 6290 true scaffold_2: 7772881-7779170 Capsella rubella
Carub.0002s1215 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 7772881-7777880 Capsella rubella
Carub.0002s1215 5.0kb downstream 5.0kb downstream 6290 true scaffold_2: 7777881-7784170 Capsella rubella
Carub.0002s1215 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 7779171-7784170 Capsella rubella
Carub.0002s1215 10.0kb upstream 10.0kb upstream 11290 true scaffold_2: 7767881-7779170 Capsella rubella
Carub.0002s1215 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 7767881-7777880 Capsella rubella
Carub.0002s1215 10.0kb downstream 10.0kb downstream 11290 true scaffold_2: 7777881-7789170 Capsella rubella
Carub.0002s1215 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 7779171-7789170 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367409 5261 Brassicaceae View MSA
123838287 5264 Brassicales-Malvales View MSA
124342273 5266 SBM View MSA
124246000 5268 Malvidae View MSA
124062447 5270 Rosid View MSA
123744256 5271 Pentapetalae View MSA
122789600 5272 Eudicot View MSA
122042359 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain