Gene : Carub.0002s0778 C. rubella v1.1
Defline:  (1 of 3) PTHR22953:SF47 - PURPLE ACID PHOSPHATASE 11-RELATED Genomic Order:  778
Name:  ? Carub.0002s0778 Secondary Identifier:  ? PAC:39244871
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5083 Capsella rubella pathologic  
Crubella PWY-6348 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0002s0778 0.5kb upstream 0.5kb upstream 2383 true scaffold_2: 3612382-3614764 Capsella rubella
Carub.0002s0778 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3612382-3612881 Capsella rubella
Carub.0002s0778 0.5kb downstream 0.5kb downstream 2383 true scaffold_2: 3612882-3615264 Capsella rubella
Carub.0002s0778 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3614765-3615264 Capsella rubella
Carub.0002s0778 1.0kb upstream 1.0kb upstream 2883 true scaffold_2: 3611882-3614764 Capsella rubella
Carub.0002s0778 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3611882-3612881 Capsella rubella
Carub.0002s0778 1.0kb downstream 1.0kb downstream 2883 true scaffold_2: 3612882-3615764 Capsella rubella
Carub.0002s0778 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3614765-3615764 Capsella rubella
Carub.0002s0778 2.0kb upstream 2.0kb upstream 3883 true scaffold_2: 3610882-3614764 Capsella rubella
Carub.0002s0778 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3610882-3612881 Capsella rubella
Carub.0002s0778 2.0kb downstream 2.0kb downstream 3883 true scaffold_2: 3612882-3616764 Capsella rubella
Carub.0002s0778 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3614765-3616764 Capsella rubella
Carub.0002s0778 5.0kb upstream 5.0kb upstream 6883 true scaffold_2: 3607882-3614764 Capsella rubella
Carub.0002s0778 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3607882-3612881 Capsella rubella
Carub.0002s0778 5.0kb downstream 5.0kb downstream 6883 true scaffold_2: 3612882-3619764 Capsella rubella
Carub.0002s0778 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3614765-3619764 Capsella rubella
Carub.0002s0778 10.0kb upstream 10.0kb upstream 11883 true scaffold_2: 3602882-3614764 Capsella rubella
Carub.0002s0778 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3602882-3612881 Capsella rubella
Carub.0002s0778 10.0kb downstream 10.0kb downstream 11883 true scaffold_2: 3612882-3624764 Capsella rubella
Carub.0002s0778 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3614765-3624764 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380337 5261 Brassicaceae View MSA
123802660 5264 Brassicales-Malvales View MSA
124349813 5266 SBM View MSA
124244573 5268 Malvidae View MSA
123951986 5270 Rosid View MSA
123737494 5271 Pentapetalae View MSA
122792847 5272 Eudicot View MSA
122050360 5273 Angiosperm View MSA
121351600 5274 Embryophyte View MSA
123426131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain