Gene : Carub.0007s1559 C. rubella v1.1
Defline:  (1 of 3) 1.14.11.12 - Gibberellin-44 dioxygenase / Gibberellin A44 oxidase Genomic Order:  1559
Name:  ? Carub.0007s1559 Secondary Identifier:  ? PAC:39234258
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5035 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1559 0.5kb upstream 0.5kb upstream 2184 true scaffold_7: 5813451-5815634 Capsella rubella
Carub.0007s1559 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 5813451-5813950 Capsella rubella
Carub.0007s1559 0.5kb downstream 0.5kb downstream 2184 true scaffold_7: 5813951-5816134 Capsella rubella
Carub.0007s1559 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 5815635-5816134 Capsella rubella
Carub.0007s1559 1.0kb upstream 1.0kb upstream 2684 true scaffold_7: 5812951-5815634 Capsella rubella
Carub.0007s1559 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 5812951-5813950 Capsella rubella
Carub.0007s1559 1.0kb downstream 1.0kb downstream 2684 true scaffold_7: 5813951-5816634 Capsella rubella
Carub.0007s1559 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 5815635-5816634 Capsella rubella
Carub.0007s1559 2.0kb upstream 2.0kb upstream 3684 true scaffold_7: 5811951-5815634 Capsella rubella
Carub.0007s1559 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 5811951-5813950 Capsella rubella
Carub.0007s1559 2.0kb downstream 2.0kb downstream 3684 true scaffold_7: 5813951-5817634 Capsella rubella
Carub.0007s1559 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 5815635-5817634 Capsella rubella
Carub.0007s1559 5.0kb upstream 5.0kb upstream 6684 true scaffold_7: 5808951-5815634 Capsella rubella
Carub.0007s1559 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 5808951-5813950 Capsella rubella
Carub.0007s1559 5.0kb downstream 5.0kb downstream 6684 true scaffold_7: 5813951-5820634 Capsella rubella
Carub.0007s1559 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 5815635-5820634 Capsella rubella
Carub.0007s1559 10.0kb upstream 10.0kb upstream 11684 true scaffold_7: 5803951-5815634 Capsella rubella
Carub.0007s1559 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 5803951-5813950 Capsella rubella
Carub.0007s1559 10.0kb downstream 10.0kb downstream 11684 true scaffold_7: 5813951-5825634 Capsella rubella
Carub.0007s1559 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 5815635-5825634 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360565 5261 Brassicaceae View MSA
123835975 5264 Brassicales-Malvales View MSA
124339186 5266 SBM View MSA
124247790 5268 Malvidae View MSA
124071928 5270 Rosid View MSA
123748774 5271 Pentapetalae View MSA
122795776 5272 Eudicot View MSA
122047405 5273 Angiosperm View MSA
121349233 5274 Embryophyte View MSA
123381227 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain