Gene : Carub.0007s1622 C. rubella v1.1
Defline:  (1 of 1) 6.3.4.5 - Argininosuccinate synthase / Citrulline--aspartate ligase Genomic Order:  1622
Name:  ? Carub.0007s1622 Secondary Identifier:  ? PAC:39233985
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ARGSYNBSUB-PWY Capsella rubella pathologic  
Crubella ARGSYN-PWY Capsella rubella pathologic  
Crubella PWY-4984 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1622 0.5kb upstream 0.5kb upstream 3553 true scaffold_7: 6014830-6018382 Capsella rubella
Carub.0007s1622 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 6014830-6015329 Capsella rubella
Carub.0007s1622 0.5kb downstream 0.5kb downstream 3553 true scaffold_7: 6015330-6018882 Capsella rubella
Carub.0007s1622 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 6018383-6018882 Capsella rubella
Carub.0007s1622 1.0kb upstream 1.0kb upstream 4053 true scaffold_7: 6014330-6018382 Capsella rubella
Carub.0007s1622 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 6014330-6015329 Capsella rubella
Carub.0007s1622 1.0kb downstream 1.0kb downstream 4053 true scaffold_7: 6015330-6019382 Capsella rubella
Carub.0007s1622 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 6018383-6019382 Capsella rubella
Carub.0007s1622 2.0kb upstream 2.0kb upstream 5053 true scaffold_7: 6013330-6018382 Capsella rubella
Carub.0007s1622 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 6013330-6015329 Capsella rubella
Carub.0007s1622 2.0kb downstream 2.0kb downstream 5053 true scaffold_7: 6015330-6020382 Capsella rubella
Carub.0007s1622 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 6018383-6020382 Capsella rubella
Carub.0007s1622 5.0kb upstream 5.0kb upstream 8053 true scaffold_7: 6010330-6018382 Capsella rubella
Carub.0007s1622 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 6010330-6015329 Capsella rubella
Carub.0007s1622 5.0kb downstream 5.0kb downstream 8053 true scaffold_7: 6015330-6023382 Capsella rubella
Carub.0007s1622 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 6018383-6023382 Capsella rubella
Carub.0007s1622 10.0kb upstream 10.0kb upstream 13053 true scaffold_7: 6005330-6018382 Capsella rubella
Carub.0007s1622 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 6005330-6015329 Capsella rubella
Carub.0007s1622 10.0kb downstream 10.0kb downstream 13053 true scaffold_7: 6015330-6028382 Capsella rubella
Carub.0007s1622 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 6018383-6028382 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041429 5273 Angiosperm View MSA
122376305 5261 Brassicaceae View MSA
123832508 5264 Brassicales-Malvales View MSA
124341527 5266 SBM View MSA
124252076 5268 Malvidae View MSA
124073317 5270 Rosid View MSA
123751861 5271 Pentapetalae View MSA
122792518 5272 Eudicot View MSA
121345676 5274 Embryophyte View MSA
123423772 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain