Gene : Carub.0007s1249 C. rubella v1.1
Defline:  (1 of 9) K10666 - E3 ubiquitin-protein ligase RNF5 (RNF5) Genomic Order:  1249
Name:  ? Carub.0007s1249 Secondary Identifier:  ? PAC:39234615
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1249 0.5kb upstream 0.5kb upstream 2211 true scaffold_7: 4755121-4757331 Capsella rubella
Carub.0007s1249 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 4755121-4755620 Capsella rubella
Carub.0007s1249 0.5kb downstream 0.5kb downstream 2211 true scaffold_7: 4755621-4757831 Capsella rubella
Carub.0007s1249 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 4757332-4757831 Capsella rubella
Carub.0007s1249 1.0kb upstream 1.0kb upstream 2711 true scaffold_7: 4754621-4757331 Capsella rubella
Carub.0007s1249 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 4754621-4755620 Capsella rubella
Carub.0007s1249 1.0kb downstream 1.0kb downstream 2711 true scaffold_7: 4755621-4758331 Capsella rubella
Carub.0007s1249 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 4757332-4758331 Capsella rubella
Carub.0007s1249 2.0kb upstream 2.0kb upstream 3711 true scaffold_7: 4753621-4757331 Capsella rubella
Carub.0007s1249 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 4753621-4755620 Capsella rubella
Carub.0007s1249 2.0kb downstream 2.0kb downstream 3711 true scaffold_7: 4755621-4759331 Capsella rubella
Carub.0007s1249 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 4757332-4759331 Capsella rubella
Carub.0007s1249 5.0kb upstream 5.0kb upstream 6711 true scaffold_7: 4750621-4757331 Capsella rubella
Carub.0007s1249 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 4750621-4755620 Capsella rubella
Carub.0007s1249 5.0kb downstream 5.0kb downstream 6711 true scaffold_7: 4755621-4762331 Capsella rubella
Carub.0007s1249 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 4757332-4762331 Capsella rubella
Carub.0007s1249 10.0kb upstream 10.0kb upstream 11711 true scaffold_7: 4745621-4757331 Capsella rubella
Carub.0007s1249 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 4745621-4755620 Capsella rubella
Carub.0007s1249 10.0kb downstream 10.0kb downstream 11711 true scaffold_7: 4755621-4767331 Capsella rubella
Carub.0007s1249 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 4757332-4767331 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362579 5261 Brassicaceae View MSA
123798387 5264 Brassicales-Malvales View MSA
124296028 5266 SBM View MSA
124250976 5268 Malvidae View MSA
123952553 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain