Gene : Carub.0007s1407 C. rubella v1.1
Defline:  (1 of 1) PTHR13773//PTHR13773:SF10 - PHOSPHATIDATE CYTIDYLYLTRANSFERASE // PHOSPHATIDATE CYTIDYLYLTRANSFERASE Genomic Order:  1407
Name:  ? Carub.0007s1407 Secondary Identifier:  ? PAC:39233001
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY0-1319 Capsella rubella pathologic  
Crubella PWY4FS-7 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1407 0.5kb upstream 0.5kb upstream 3620 true scaffold_7: 5295358-5298977 Capsella rubella
Carub.0007s1407 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 5298478-5298977 Capsella rubella
Carub.0007s1407 0.5kb downstream 0.5kb downstream 3620 true scaffold_7: 5294858-5298477 Capsella rubella
Carub.0007s1407 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 5294858-5295357 Capsella rubella
Carub.0007s1407 1.0kb upstream 1.0kb upstream 4120 true scaffold_7: 5295358-5299477 Capsella rubella
Carub.0007s1407 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 5298478-5299477 Capsella rubella
Carub.0007s1407 1.0kb downstream 1.0kb downstream 4120 true scaffold_7: 5294358-5298477 Capsella rubella
Carub.0007s1407 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 5294358-5295357 Capsella rubella
Carub.0007s1407 2.0kb upstream 2.0kb upstream 5120 true scaffold_7: 5295358-5300477 Capsella rubella
Carub.0007s1407 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 5298478-5300477 Capsella rubella
Carub.0007s1407 2.0kb downstream 2.0kb downstream 5120 true scaffold_7: 5293358-5298477 Capsella rubella
Carub.0007s1407 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 5293358-5295357 Capsella rubella
Carub.0007s1407 5.0kb upstream 5.0kb upstream 8120 true scaffold_7: 5295358-5303477 Capsella rubella
Carub.0007s1407 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 5298478-5303477 Capsella rubella
Carub.0007s1407 5.0kb downstream 5.0kb downstream 8120 true scaffold_7: 5290358-5298477 Capsella rubella
Carub.0007s1407 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 5290358-5295357 Capsella rubella
Carub.0007s1407 10.0kb upstream 10.0kb upstream 13120 true scaffold_7: 5295358-5308477 Capsella rubella
Carub.0007s1407 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 5298478-5308477 Capsella rubella
Carub.0007s1407 10.0kb downstream 10.0kb downstream 13120 true scaffold_7: 5285358-5298477 Capsella rubella
Carub.0007s1407 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 5285358-5295357 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374198 5261 Brassicaceae View MSA
123835953 5264 Brassicales-Malvales View MSA
124322111 5266 SBM View MSA
124243920 5268 Malvidae View MSA
124063669 5270 Rosid View MSA
123751234 5271 Pentapetalae View MSA
122787509 5272 Eudicot View MSA
122045670 5273 Angiosperm View MSA
121346295 5274 Embryophyte View MSA
123428107 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain