Gene : Carub.0007s0826 C. rubella v1.1

Defline:  (1 of 1) PTHR31356//PTHR31356:SF4 - FAMILY NOT NAMED // L-ASCORBATE PEROXIDASE 6-RELATED Genomic Order:  826
Name:  ? Carub.0007s0826 Secondary Identifier:  ? PAC:39233313

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-2261 Capsella rubella pathologic  
Crubella PWY-6959 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s0826 0.5kb upstream 0.5kb upstream 2942 true scaffold_7: 3147781-3150722 Capsella rubella
Carub.0007s0826 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 3150223-3150722 Capsella rubella
Carub.0007s0826 0.5kb downstream 0.5kb downstream 2942 true scaffold_7: 3147281-3150222 Capsella rubella
Carub.0007s0826 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 3147281-3147780 Capsella rubella
Carub.0007s0826 1.0kb upstream 1.0kb upstream 3442 true scaffold_7: 3147781-3151222 Capsella rubella
Carub.0007s0826 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 3150223-3151222 Capsella rubella
Carub.0007s0826 1.0kb downstream 1.0kb downstream 3442 true scaffold_7: 3146781-3150222 Capsella rubella
Carub.0007s0826 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 3146781-3147780 Capsella rubella
Carub.0007s0826 2.0kb upstream 2.0kb upstream 4442 true scaffold_7: 3147781-3152222 Capsella rubella
Carub.0007s0826 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 3150223-3152222 Capsella rubella
Carub.0007s0826 2.0kb downstream 2.0kb downstream 4442 true scaffold_7: 3145781-3150222 Capsella rubella
Carub.0007s0826 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 3145781-3147780 Capsella rubella
Carub.0007s0826 5.0kb upstream 5.0kb upstream 7442 true scaffold_7: 3147781-3155222 Capsella rubella
Carub.0007s0826 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 3150223-3155222 Capsella rubella
Carub.0007s0826 5.0kb downstream 5.0kb downstream 7442 true scaffold_7: 3142781-3150222 Capsella rubella
Carub.0007s0826 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 3142781-3147780 Capsella rubella
Carub.0007s0826 10.0kb upstream 10.0kb upstream 12442 true scaffold_7: 3147781-3160222 Capsella rubella
Carub.0007s0826 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 3150223-3160222 Capsella rubella
Carub.0007s0826 10.0kb downstream 10.0kb downstream 12442 true scaffold_7: 3137781-3150222 Capsella rubella
Carub.0007s0826 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 3137781-3147780 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367760 5261 Brassicaceae View MSA
123834237 5264 Brassicales-Malvales View MSA
124342158 5266 SBM View MSA
124239961 5268 Malvidae View MSA
124065739 5270 Rosid View MSA
123737315 5271 Pentapetalae View MSA
122787755 5272 Eudicot View MSA
122044466 5273 Angiosperm View MSA
121347690 5274 Embryophyte View MSA
123425529 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain