Gene : Carub.0007s0868 C. rubella v1.1
Defline:  (1 of 2) PTHR11592:SF11 - PHOSPHOLIPID HYDROPEROXIDE GLUTATHIONE PEROXIDASE 1, CHLOROPLASTIC-RELATED Genomic Order:  868
Name:  ? Carub.0007s0868 Secondary Identifier:  ? PAC:39231836
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-4081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s0868 0.5kb upstream 0.5kb upstream 1982 true scaffold_7: 3314288-3316269 Capsella rubella
Carub.0007s0868 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 3315770-3316269 Capsella rubella
Carub.0007s0868 0.5kb downstream 0.5kb downstream 1982 true scaffold_7: 3313788-3315769 Capsella rubella
Carub.0007s0868 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 3313788-3314287 Capsella rubella
Carub.0007s0868 1.0kb upstream 1.0kb upstream 2482 true scaffold_7: 3314288-3316769 Capsella rubella
Carub.0007s0868 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 3315770-3316769 Capsella rubella
Carub.0007s0868 1.0kb downstream 1.0kb downstream 2482 true scaffold_7: 3313288-3315769 Capsella rubella
Carub.0007s0868 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 3313288-3314287 Capsella rubella
Carub.0007s0868 2.0kb upstream 2.0kb upstream 3482 true scaffold_7: 3314288-3317769 Capsella rubella
Carub.0007s0868 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 3315770-3317769 Capsella rubella
Carub.0007s0868 2.0kb downstream 2.0kb downstream 3482 true scaffold_7: 3312288-3315769 Capsella rubella
Carub.0007s0868 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 3312288-3314287 Capsella rubella
Carub.0007s0868 5.0kb upstream 5.0kb upstream 6482 true scaffold_7: 3314288-3320769 Capsella rubella
Carub.0007s0868 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 3315770-3320769 Capsella rubella
Carub.0007s0868 5.0kb downstream 5.0kb downstream 6482 true scaffold_7: 3309288-3315769 Capsella rubella
Carub.0007s0868 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 3309288-3314287 Capsella rubella
Carub.0007s0868 10.0kb upstream 10.0kb upstream 11482 true scaffold_7: 3314288-3325769 Capsella rubella
Carub.0007s0868 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 3315770-3325769 Capsella rubella
Carub.0007s0868 10.0kb downstream 10.0kb downstream 11482 true scaffold_7: 3304288-3315769 Capsella rubella
Carub.0007s0868 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 3304288-3314287 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379433 5261 Brassicaceae View MSA
123838768 5264 Brassicales-Malvales View MSA
124342773 5266 SBM View MSA
124240030 5268 Malvidae View MSA
124063282 5270 Rosid View MSA
123740898 5271 Pentapetalae View MSA
122792011 5272 Eudicot View MSA
122046042 5273 Angiosperm View MSA
121349724 5274 Embryophyte View MSA
123426849 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain