Gene : Carub.0007s1378 C. rubella v1.1
Defline:  (1 of 3) K01696 - tryptophan synthase beta chain (trpB) Genomic Order:  1378
Name:  ? Carub.0007s1378 Secondary Identifier:  ? PAC:39231982
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRPSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1378 0.5kb upstream 0.5kb upstream 2725 true scaffold_7: 5197918-5200642 Capsella rubella
Carub.0007s1378 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 5200143-5200642 Capsella rubella
Carub.0007s1378 0.5kb downstream 0.5kb downstream 2725 true scaffold_7: 5197418-5200142 Capsella rubella
Carub.0007s1378 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 5197418-5197917 Capsella rubella
Carub.0007s1378 1.0kb upstream 1.0kb upstream 3225 true scaffold_7: 5197918-5201142 Capsella rubella
Carub.0007s1378 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 5200143-5201142 Capsella rubella
Carub.0007s1378 1.0kb downstream 1.0kb downstream 3225 true scaffold_7: 5196918-5200142 Capsella rubella
Carub.0007s1378 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 5196918-5197917 Capsella rubella
Carub.0007s1378 2.0kb upstream 2.0kb upstream 4225 true scaffold_7: 5197918-5202142 Capsella rubella
Carub.0007s1378 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 5200143-5202142 Capsella rubella
Carub.0007s1378 2.0kb downstream 2.0kb downstream 4225 true scaffold_7: 5195918-5200142 Capsella rubella
Carub.0007s1378 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 5195918-5197917 Capsella rubella
Carub.0007s1378 5.0kb upstream 5.0kb upstream 7225 true scaffold_7: 5197918-5205142 Capsella rubella
Carub.0007s1378 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 5200143-5205142 Capsella rubella
Carub.0007s1378 5.0kb downstream 5.0kb downstream 7225 true scaffold_7: 5192918-5200142 Capsella rubella
Carub.0007s1378 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 5192918-5197917 Capsella rubella
Carub.0007s1378 10.0kb upstream 10.0kb upstream 12225 true scaffold_7: 5197918-5210142 Capsella rubella
Carub.0007s1378 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 5200143-5210142 Capsella rubella
Carub.0007s1378 10.0kb downstream 10.0kb downstream 12225 true scaffold_7: 5187918-5200142 Capsella rubella
Carub.0007s1378 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 5187918-5197917 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360567 5261 Brassicaceae View MSA
123837173 5264 Brassicales-Malvales View MSA
124344388 5266 SBM View MSA
124250400 5268 Malvidae View MSA
124062384 5270 Rosid View MSA
123745831 5271 Pentapetalae View MSA
122787401 5272 Eudicot View MSA
122044231 5273 Angiosperm View MSA
121344651 5274 Embryophyte View MSA
123423776 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain