Gene : Carub.0007s2601 C. rubella v1.1
Defline:  (1 of 9) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2601
Name:  ? Carub.0007s2601 Secondary Identifier:  ? PAC:39232759
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s2601 0.5kb upstream 0.5kb upstream 2339 true scaffold_7: 9874488-9876826 Capsella rubella
Carub.0007s2601 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 9876327-9876826 Capsella rubella
Carub.0007s2601 0.5kb downstream 0.5kb downstream 2339 true scaffold_7: 9873988-9876326 Capsella rubella
Carub.0007s2601 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 9873988-9874487 Capsella rubella
Carub.0007s2601 1.0kb upstream 1.0kb upstream 2839 true scaffold_7: 9874488-9877326 Capsella rubella
Carub.0007s2601 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 9876327-9877326 Capsella rubella
Carub.0007s2601 1.0kb downstream 1.0kb downstream 2839 true scaffold_7: 9873488-9876326 Capsella rubella
Carub.0007s2601 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 9873488-9874487 Capsella rubella
Carub.0007s2601 2.0kb upstream 2.0kb upstream 3839 true scaffold_7: 9874488-9878326 Capsella rubella
Carub.0007s2601 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 9876327-9878326 Capsella rubella
Carub.0007s2601 2.0kb downstream 2.0kb downstream 3839 true scaffold_7: 9872488-9876326 Capsella rubella
Carub.0007s2601 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 9872488-9874487 Capsella rubella
Carub.0007s2601 5.0kb upstream 5.0kb upstream 6839 true scaffold_7: 9874488-9881326 Capsella rubella
Carub.0007s2601 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 9876327-9881326 Capsella rubella
Carub.0007s2601 5.0kb downstream 5.0kb downstream 6839 true scaffold_7: 9869488-9876326 Capsella rubella
Carub.0007s2601 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 9869488-9874487 Capsella rubella
Carub.0007s2601 10.0kb upstream 10.0kb upstream 11839 true scaffold_7: 9874488-9886326 Capsella rubella
Carub.0007s2601 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 9876327-9886326 Capsella rubella
Carub.0007s2601 10.0kb downstream 10.0kb downstream 11839 true scaffold_7: 9864488-9876326 Capsella rubella
Carub.0007s2601 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 9864488-9874487 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338340 5261 Brassicaceae View MSA
123829899 5264 Brassicales-Malvales View MSA
124343234 5266 SBM View MSA
124252420 5268 Malvidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain