Gene : Carub.0007s2521 C. rubella v1.1
Defline:  (1 of 1) PTHR10209//PTHR10209:SF226 - OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN // 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN Genomic Order:  2521
Name:  ? Carub.0007s2521 Secondary Identifier:  ? PAC:39234311
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5125 Capsella rubella pathologic  
Crubella PWY-641 Capsella rubella pathologic  
Crubella PWY-7267 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s2521 0.5kb upstream 0.5kb upstream 1898 true scaffold_7: 9573399-9575296 Capsella rubella
Carub.0007s2521 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 9573399-9573898 Capsella rubella
Carub.0007s2521 0.5kb downstream 0.5kb downstream 1898 true scaffold_7: 9573899-9575796 Capsella rubella
Carub.0007s2521 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 9575297-9575796 Capsella rubella
Carub.0007s2521 1.0kb upstream 1.0kb upstream 2398 true scaffold_7: 9572899-9575296 Capsella rubella
Carub.0007s2521 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 9572899-9573898 Capsella rubella
Carub.0007s2521 1.0kb downstream 1.0kb downstream 2398 true scaffold_7: 9573899-9576296 Capsella rubella
Carub.0007s2521 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 9575297-9576296 Capsella rubella
Carub.0007s2521 2.0kb upstream 2.0kb upstream 3398 true scaffold_7: 9571899-9575296 Capsella rubella
Carub.0007s2521 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 9571899-9573898 Capsella rubella
Carub.0007s2521 2.0kb downstream 2.0kb downstream 3398 true scaffold_7: 9573899-9577296 Capsella rubella
Carub.0007s2521 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 9575297-9577296 Capsella rubella
Carub.0007s2521 5.0kb upstream 5.0kb upstream 6398 true scaffold_7: 9568899-9575296 Capsella rubella
Carub.0007s2521 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 9568899-9573898 Capsella rubella
Carub.0007s2521 5.0kb downstream 5.0kb downstream 6398 true scaffold_7: 9573899-9580296 Capsella rubella
Carub.0007s2521 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 9575297-9580296 Capsella rubella
Carub.0007s2521 10.0kb upstream 10.0kb upstream 11398 true scaffold_7: 9563899-9575296 Capsella rubella
Carub.0007s2521 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 9563899-9573898 Capsella rubella
Carub.0007s2521 10.0kb downstream 10.0kb downstream 11398 true scaffold_7: 9573899-9585296 Capsella rubella
Carub.0007s2521 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 9575297-9585296 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026742 5273 Angiosperm View MSA
122370796 5261 Brassicaceae View MSA
123828871 5264 Brassicales-Malvales View MSA
124341199 5266 SBM View MSA
124237151 5268 Malvidae View MSA
124062764 5270 Rosid View MSA
123736643 5271 Pentapetalae View MSA
122786747 5272 Eudicot View MSA
121347125 5274 Embryophyte View MSA
123380497 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain