Gene : Carub.0007s2456 C. rubella v1.1
Defline:  (1 of 1) 4.2.1.18 - Methylglutaconyl-CoA hydratase Genomic Order:  2456
Name:  ? Carub.0007s2456 Secondary Identifier:  ? PAC:39234985
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella LEU-DEG2-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s2456 0.5kb upstream 0.5kb upstream 2726 true scaffold_7: 9327355-9330080 Capsella rubella
Carub.0007s2456 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 9327355-9327854 Capsella rubella
Carub.0007s2456 0.5kb downstream 0.5kb downstream 2726 true scaffold_7: 9327855-9330580 Capsella rubella
Carub.0007s2456 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 9330081-9330580 Capsella rubella
Carub.0007s2456 1.0kb upstream 1.0kb upstream 3226 true scaffold_7: 9326855-9330080 Capsella rubella
Carub.0007s2456 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 9326855-9327854 Capsella rubella
Carub.0007s2456 1.0kb downstream 1.0kb downstream 3226 true scaffold_7: 9327855-9331080 Capsella rubella
Carub.0007s2456 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 9330081-9331080 Capsella rubella
Carub.0007s2456 2.0kb upstream 2.0kb upstream 4226 true scaffold_7: 9325855-9330080 Capsella rubella
Carub.0007s2456 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 9325855-9327854 Capsella rubella
Carub.0007s2456 2.0kb downstream 2.0kb downstream 4226 true scaffold_7: 9327855-9332080 Capsella rubella
Carub.0007s2456 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 9330081-9332080 Capsella rubella
Carub.0007s2456 5.0kb upstream 5.0kb upstream 7226 true scaffold_7: 9322855-9330080 Capsella rubella
Carub.0007s2456 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 9322855-9327854 Capsella rubella
Carub.0007s2456 5.0kb downstream 5.0kb downstream 7226 true scaffold_7: 9327855-9335080 Capsella rubella
Carub.0007s2456 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 9330081-9335080 Capsella rubella
Carub.0007s2456 10.0kb upstream 10.0kb upstream 12226 true scaffold_7: 9317855-9330080 Capsella rubella
Carub.0007s2456 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 9317855-9327854 Capsella rubella
Carub.0007s2456 10.0kb downstream 10.0kb downstream 12226 true scaffold_7: 9327855-9340080 Capsella rubella
Carub.0007s2456 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 9330081-9340080 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365847 5261 Brassicaceae View MSA
123834998 5264 Brassicales-Malvales View MSA
124321989 5266 SBM View MSA
124240745 5268 Malvidae View MSA
124069005 5270 Rosid View MSA
123739015 5271 Pentapetalae View MSA
122790936 5272 Eudicot View MSA
122045797 5273 Angiosperm View MSA
121351751 5274 Embryophyte View MSA
123427880 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain