Gene : Carub.0006s1332 C. rubella v1.1
Defline:  (1 of 2) PTHR24326:SF264 - HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-20-RELATED Genomic Order:  1332
Name:  ? Carub.0006s1332 Secondary Identifier:  ? PAC:39249901
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1332 0.5kb upstream 0.5kb upstream 2351 true scaffold_6: 4958206-4960556 Capsella rubella
Carub.0006s1332 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4960057-4960556 Capsella rubella
Carub.0006s1332 0.5kb downstream 0.5kb downstream 2351 true scaffold_6: 4957706-4960056 Capsella rubella
Carub.0006s1332 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4957706-4958205 Capsella rubella
Carub.0006s1332 1.0kb upstream 1.0kb upstream 2851 true scaffold_6: 4958206-4961056 Capsella rubella
Carub.0006s1332 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4960057-4961056 Capsella rubella
Carub.0006s1332 1.0kb downstream 1.0kb downstream 2851 true scaffold_6: 4957206-4960056 Capsella rubella
Carub.0006s1332 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4957206-4958205 Capsella rubella
Carub.0006s1332 2.0kb upstream 2.0kb upstream 3851 true scaffold_6: 4958206-4962056 Capsella rubella
Carub.0006s1332 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4960057-4962056 Capsella rubella
Carub.0006s1332 2.0kb downstream 2.0kb downstream 3851 true scaffold_6: 4956206-4960056 Capsella rubella
Carub.0006s1332 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4956206-4958205 Capsella rubella
Carub.0006s1332 5.0kb upstream 5.0kb upstream 6851 true scaffold_6: 4958206-4965056 Capsella rubella
Carub.0006s1332 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4960057-4965056 Capsella rubella
Carub.0006s1332 5.0kb downstream 5.0kb downstream 6851 true scaffold_6: 4953206-4960056 Capsella rubella
Carub.0006s1332 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4953206-4958205 Capsella rubella
Carub.0006s1332 10.0kb upstream 10.0kb upstream 11851 true scaffold_6: 4958206-4970056 Capsella rubella
Carub.0006s1332 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4960057-4970056 Capsella rubella
Carub.0006s1332 10.0kb downstream 10.0kb downstream 11851 true scaffold_6: 4948206-4960056 Capsella rubella
Carub.0006s1332 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4948206-4958205 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376493 5261 Brassicaceae View MSA
123837312 5264 Brassicales-Malvales View MSA
124343969 5266 SBM View MSA
124251530 5268 Malvidae View MSA
124071731 5270 Rosid View MSA
123747120 5271 Pentapetalae View MSA
122786437 5272 Eudicot View MSA
122042617 5273 Angiosperm View MSA
121351579 5274 Embryophyte View MSA
123382235 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain