Gene : Carub.0006s1617 C. rubella v1.1
Defline:  (1 of 1) PTHR10024//PTHR10024:SF182 - SYNAPTOTAGMIN // C2 CALCIUM/LIPID-BINDING AND PHOSPHORIBOSYLTRANSFERASE C-TERMINAL DOMAIN-CONTAINING PROTEIN Genomic Order:  1617
Name:  ? Carub.0006s1617 Secondary Identifier:  ? PAC:39246972
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1617 0.5kb upstream 0.5kb upstream 3124 true scaffold_6: 5989723-5992846 Capsella rubella
Carub.0006s1617 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 5989723-5990222 Capsella rubella
Carub.0006s1617 0.5kb downstream 0.5kb downstream 3124 true scaffold_6: 5990223-5993346 Capsella rubella
Carub.0006s1617 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 5992847-5993346 Capsella rubella
Carub.0006s1617 1.0kb upstream 1.0kb upstream 3624 true scaffold_6: 5989223-5992846 Capsella rubella
Carub.0006s1617 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 5989223-5990222 Capsella rubella
Carub.0006s1617 1.0kb downstream 1.0kb downstream 3624 true scaffold_6: 5990223-5993846 Capsella rubella
Carub.0006s1617 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 5992847-5993846 Capsella rubella
Carub.0006s1617 2.0kb upstream 2.0kb upstream 4624 true scaffold_6: 5988223-5992846 Capsella rubella
Carub.0006s1617 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 5988223-5990222 Capsella rubella
Carub.0006s1617 2.0kb downstream 2.0kb downstream 4624 true scaffold_6: 5990223-5994846 Capsella rubella
Carub.0006s1617 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 5992847-5994846 Capsella rubella
Carub.0006s1617 5.0kb upstream 5.0kb upstream 7624 true scaffold_6: 5985223-5992846 Capsella rubella
Carub.0006s1617 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 5985223-5990222 Capsella rubella
Carub.0006s1617 5.0kb downstream 5.0kb downstream 7624 true scaffold_6: 5990223-5997846 Capsella rubella
Carub.0006s1617 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 5992847-5997846 Capsella rubella
Carub.0006s1617 10.0kb upstream 10.0kb upstream 12624 true scaffold_6: 5980223-5992846 Capsella rubella
Carub.0006s1617 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 5980223-5990222 Capsella rubella
Carub.0006s1617 10.0kb downstream 10.0kb downstream 12624 true scaffold_6: 5990223-6002846 Capsella rubella
Carub.0006s1617 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 5992847-6002846 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122337715 5261 Brassicaceae View MSA
123837585 5264 Brassicales-Malvales View MSA
124346063 5266 SBM View MSA
124241768 5268 Malvidae View MSA
124062380 5270 Rosid View MSA
123748968 5271 Pentapetalae View MSA
122790054 5272 Eudicot View MSA
122049348 5273 Angiosperm View MSA
121350979 5274 Embryophyte View MSA
123427289 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain