Gene : Carub.0006s3718 C. rubella v1.1

Defline:  (1 of 3) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  3718
Name:  ? Carub.0006s3718 Secondary Identifier:  ? PAC:39246450

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3718 0.5kb upstream 0.5kb upstream 1976 true scaffold_6: 16586574-16588549 Capsella rubella
Carub.0006s3718 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 16588050-16588549 Capsella rubella
Carub.0006s3718 0.5kb downstream 0.5kb downstream 1976 true scaffold_6: 16586074-16588049 Capsella rubella
Carub.0006s3718 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 16586074-16586573 Capsella rubella
Carub.0006s3718 1.0kb upstream 1.0kb upstream 2476 true scaffold_6: 16586574-16589049 Capsella rubella
Carub.0006s3718 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 16588050-16589049 Capsella rubella
Carub.0006s3718 1.0kb downstream 1.0kb downstream 2476 true scaffold_6: 16585574-16588049 Capsella rubella
Carub.0006s3718 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 16585574-16586573 Capsella rubella
Carub.0006s3718 2.0kb upstream 2.0kb upstream 3476 true scaffold_6: 16586574-16590049 Capsella rubella
Carub.0006s3718 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 16588050-16590049 Capsella rubella
Carub.0006s3718 2.0kb downstream 2.0kb downstream 3476 true scaffold_6: 16584574-16588049 Capsella rubella
Carub.0006s3718 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 16584574-16586573 Capsella rubella
Carub.0006s3718 5.0kb upstream 5.0kb upstream 6476 true scaffold_6: 16586574-16593049 Capsella rubella
Carub.0006s3718 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 16588050-16593049 Capsella rubella
Carub.0006s3718 5.0kb downstream 5.0kb downstream 6476 true scaffold_6: 16581574-16588049 Capsella rubella
Carub.0006s3718 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 16581574-16586573 Capsella rubella
Carub.0006s3718 10.0kb upstream 10.0kb upstream 11476 true scaffold_6: 16586574-16598049 Capsella rubella
Carub.0006s3718 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 16588050-16598049 Capsella rubella
Carub.0006s3718 10.0kb downstream 10.0kb downstream 11476 true scaffold_6: 16576574-16588049 Capsella rubella
Carub.0006s3718 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 16576574-16586573 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376828 5261 Brassicaceae View MSA
123828982 5264 Brassicales-Malvales View MSA
124336806 5266 SBM View MSA
124239117 5268 Malvidae View MSA
124068304 5270 Rosid View MSA
123739380 5271 Pentapetalae View MSA
122792095 5272 Eudicot View MSA
122045794 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain