Gene : Carub.0006s2783 C. rubella v1.1
Defline:  (1 of 6) K00940 - nucleoside-diphosphate kinase (ndk, NME) Genomic Order:  2783
Name:  ? Carub.0006s2783 Secondary Identifier:  ? PAC:39246132
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Sequence Feature Displayer

Ontology Annotation Displayer

21 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY0-162 Capsella rubella pathologic  
Crubella PWY-6126 Capsella rubella pathologic  
Crubella PWY-6545 Capsella rubella pathologic  
Crubella PWY-7176 Capsella rubella pathologic  
Crubella PWY-7184 Capsella rubella pathologic  
Crubella PWY-7196 Capsella rubella pathologic  
Crubella PWY-7197 Capsella rubella pathologic  
Crubella PWY-7200 Capsella rubella pathologic  
Crubella PWY-7205 Capsella rubella pathologic  
Crubella PWY-7208 Capsella rubella pathologic  
Crubella PWY-7210 Capsella rubella pathologic  
Crubella PWY-7211 Capsella rubella pathologic  
Crubella PWY-7220 Capsella rubella pathologic  
Crubella PWY-7221 Capsella rubella pathologic  
Crubella PWY-7222 Capsella rubella pathologic  
Crubella PWY-7224 Capsella rubella pathologic  
Crubella PWY-7226 Capsella rubella pathologic  
Crubella PWY-7227 Capsella rubella pathologic  
Crubella PWY-7228 Capsella rubella pathologic  
Crubella PWY-7229 Capsella rubella pathologic  
Crubella PWY-841 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2783 0.5kb upstream 0.5kb upstream 1953 true scaffold_6: 12557651-12559603 Capsella rubella
Carub.0006s2783 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 12557651-12558150 Capsella rubella
Carub.0006s2783 0.5kb downstream 0.5kb downstream 1953 true scaffold_6: 12558151-12560103 Capsella rubella
Carub.0006s2783 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 12559604-12560103 Capsella rubella
Carub.0006s2783 1.0kb upstream 1.0kb upstream 2453 true scaffold_6: 12557151-12559603 Capsella rubella
Carub.0006s2783 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 12557151-12558150 Capsella rubella
Carub.0006s2783 1.0kb downstream 1.0kb downstream 2453 true scaffold_6: 12558151-12560603 Capsella rubella
Carub.0006s2783 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 12559604-12560603 Capsella rubella
Carub.0006s2783 2.0kb upstream 2.0kb upstream 3453 true scaffold_6: 12556151-12559603 Capsella rubella
Carub.0006s2783 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 12556151-12558150 Capsella rubella
Carub.0006s2783 2.0kb downstream 2.0kb downstream 3453 true scaffold_6: 12558151-12561603 Capsella rubella
Carub.0006s2783 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 12559604-12561603 Capsella rubella
Carub.0006s2783 5.0kb upstream 5.0kb upstream 6453 true scaffold_6: 12553151-12559603 Capsella rubella
Carub.0006s2783 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 12553151-12558150 Capsella rubella
Carub.0006s2783 5.0kb downstream 5.0kb downstream 6453 true scaffold_6: 12558151-12564603 Capsella rubella
Carub.0006s2783 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 12559604-12564603 Capsella rubella
Carub.0006s2783 10.0kb upstream 10.0kb upstream 11453 true scaffold_6: 12548151-12559603 Capsella rubella
Carub.0006s2783 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 12548151-12558150 Capsella rubella
Carub.0006s2783 10.0kb downstream 10.0kb downstream 11453 true scaffold_6: 12558151-12569603 Capsella rubella
Carub.0006s2783 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 12559604-12569603 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378191 5261 Brassicaceae View MSA
123835763 5264 Brassicales-Malvales View MSA
124322089 5266 SBM View MSA
124246800 5268 Malvidae View MSA
124064787 5270 Rosid View MSA
123750208 5271 Pentapetalae View MSA
122791654 5272 Eudicot View MSA
122046358 5273 Angiosperm View MSA
123428962 5275 Viridiplantae View MSA
121348725 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain