Gene : Carub.0006s2821 C. rubella v1.1
Defline:  (1 of 3) PTHR11200:SF128 - TYPE I INOSITOL 1,4,5-TRISPHOSPHATE 5-PHOSPHATASE 1 Genomic Order:  2821
Name:  ? Carub.0006s2821 Secondary Identifier:  ? PAC:39246712
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6358 Capsella rubella pathologic  
Crubella PWY-6363 Capsella rubella pathologic  
Crubella PWY-6364 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2821 0.5kb upstream 0.5kb upstream 3296 true scaffold_6: 12795084-12798379 Capsella rubella
Carub.0006s2821 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 12797880-12798379 Capsella rubella
Carub.0006s2821 0.5kb downstream 0.5kb downstream 3296 true scaffold_6: 12794584-12797879 Capsella rubella
Carub.0006s2821 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 12794584-12795083 Capsella rubella
Carub.0006s2821 1.0kb upstream 1.0kb upstream 3796 true scaffold_6: 12795084-12798879 Capsella rubella
Carub.0006s2821 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 12797880-12798879 Capsella rubella
Carub.0006s2821 1.0kb downstream 1.0kb downstream 3796 true scaffold_6: 12794084-12797879 Capsella rubella
Carub.0006s2821 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 12794084-12795083 Capsella rubella
Carub.0006s2821 2.0kb upstream 2.0kb upstream 4796 true scaffold_6: 12795084-12799879 Capsella rubella
Carub.0006s2821 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 12797880-12799879 Capsella rubella
Carub.0006s2821 2.0kb downstream 2.0kb downstream 4796 true scaffold_6: 12793084-12797879 Capsella rubella
Carub.0006s2821 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 12793084-12795083 Capsella rubella
Carub.0006s2821 5.0kb upstream 5.0kb upstream 7796 true scaffold_6: 12795084-12802879 Capsella rubella
Carub.0006s2821 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 12797880-12802879 Capsella rubella
Carub.0006s2821 5.0kb downstream 5.0kb downstream 7796 true scaffold_6: 12790084-12797879 Capsella rubella
Carub.0006s2821 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 12790084-12795083 Capsella rubella
Carub.0006s2821 10.0kb upstream 10.0kb upstream 12796 true scaffold_6: 12795084-12807879 Capsella rubella
Carub.0006s2821 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 12797880-12807879 Capsella rubella
Carub.0006s2821 10.0kb downstream 10.0kb downstream 12796 true scaffold_6: 12785084-12797879 Capsella rubella
Carub.0006s2821 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 12785084-12795083 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370213 5261 Brassicaceae View MSA
123839810 5264 Brassicales-Malvales View MSA
124339394 5266 SBM View MSA
124241049 5268 Malvidae View MSA
124064481 5270 Rosid View MSA
123740737 5271 Pentapetalae View MSA
122795494 5272 Eudicot View MSA
122042148 5273 Angiosperm View MSA
121350777 5274 Embryophyte View MSA
123427535 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain