Gene : Carub.0006s2881 C. rubella v1.1
Defline:  (1 of 1) PTHR10584:SF169 - FRUCTOKINASE-5-RELATED Genomic Order:  2881
Name:  ? Carub.0006s2881 Secondary Identifier:  ? PAC:39249447
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-3801 Capsella rubella pathologic  
Crubella PWY-4101 Capsella rubella pathologic  
Crubella PWY-621 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2881 0.5kb upstream 0.5kb upstream 1881 true scaffold_6: 13045576-13047456 Capsella rubella
Carub.0006s2881 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 13046957-13047456 Capsella rubella
Carub.0006s2881 0.5kb downstream 0.5kb downstream 1881 true scaffold_6: 13045076-13046956 Capsella rubella
Carub.0006s2881 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 13045076-13045575 Capsella rubella
Carub.0006s2881 1.0kb upstream 1.0kb upstream 2381 true scaffold_6: 13045576-13047956 Capsella rubella
Carub.0006s2881 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 13046957-13047956 Capsella rubella
Carub.0006s2881 1.0kb downstream 1.0kb downstream 2381 true scaffold_6: 13044576-13046956 Capsella rubella
Carub.0006s2881 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 13044576-13045575 Capsella rubella
Carub.0006s2881 2.0kb upstream 2.0kb upstream 3381 true scaffold_6: 13045576-13048956 Capsella rubella
Carub.0006s2881 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 13046957-13048956 Capsella rubella
Carub.0006s2881 2.0kb downstream 2.0kb downstream 3381 true scaffold_6: 13043576-13046956 Capsella rubella
Carub.0006s2881 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 13043576-13045575 Capsella rubella
Carub.0006s2881 5.0kb upstream 5.0kb upstream 6381 true scaffold_6: 13045576-13051956 Capsella rubella
Carub.0006s2881 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 13046957-13051956 Capsella rubella
Carub.0006s2881 5.0kb downstream 5.0kb downstream 6381 true scaffold_6: 13040576-13046956 Capsella rubella
Carub.0006s2881 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 13040576-13045575 Capsella rubella
Carub.0006s2881 10.0kb upstream 10.0kb upstream 11381 true scaffold_6: 13045576-13056956 Capsella rubella
Carub.0006s2881 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 13046957-13056956 Capsella rubella
Carub.0006s2881 10.0kb downstream 10.0kb downstream 11381 true scaffold_6: 13035576-13046956 Capsella rubella
Carub.0006s2881 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 13035576-13045575 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367204 5261 Brassicaceae View MSA
123836288 5264 Brassicales-Malvales View MSA
124341255 5266 SBM View MSA
124238194 5268 Malvidae View MSA
124067089 5270 Rosid View MSA
123741364 5271 Pentapetalae View MSA
122789669 5272 Eudicot View MSA
122050267 5273 Angiosperm View MSA
121350713 5274 Embryophyte View MSA
123424695 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain