Gene : Carub.0006s2450 C. rubella v1.1
Defline:  (1 of 4) 6.1.1.3 - Threonine--tRNA ligase / Threonyl-tRNA synthetase Genomic Order:  2450
Name:  ? Carub.0006s2450 Secondary Identifier:  ? PAC:39248726
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2450 0.5kb upstream 0.5kb upstream 4921 true scaffold_6: 9366811-9371731 Capsella rubella
Carub.0006s2450 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 9366811-9367310 Capsella rubella
Carub.0006s2450 0.5kb downstream 0.5kb downstream 4921 true scaffold_6: 9367311-9372231 Capsella rubella
Carub.0006s2450 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 9371732-9372231 Capsella rubella
Carub.0006s2450 1.0kb upstream 1.0kb upstream 5421 true scaffold_6: 9366311-9371731 Capsella rubella
Carub.0006s2450 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 9366311-9367310 Capsella rubella
Carub.0006s2450 1.0kb downstream 1.0kb downstream 5421 true scaffold_6: 9367311-9372731 Capsella rubella
Carub.0006s2450 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 9371732-9372731 Capsella rubella
Carub.0006s2450 2.0kb upstream 2.0kb upstream 6421 true scaffold_6: 9365311-9371731 Capsella rubella
Carub.0006s2450 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 9365311-9367310 Capsella rubella
Carub.0006s2450 2.0kb downstream 2.0kb downstream 6421 true scaffold_6: 9367311-9373731 Capsella rubella
Carub.0006s2450 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 9371732-9373731 Capsella rubella
Carub.0006s2450 5.0kb upstream 5.0kb upstream 9421 true scaffold_6: 9362311-9371731 Capsella rubella
Carub.0006s2450 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 9362311-9367310 Capsella rubella
Carub.0006s2450 5.0kb downstream 5.0kb downstream 9421 true scaffold_6: 9367311-9376731 Capsella rubella
Carub.0006s2450 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 9371732-9376731 Capsella rubella
Carub.0006s2450 10.0kb upstream 10.0kb upstream 14421 true scaffold_6: 9357311-9371731 Capsella rubella
Carub.0006s2450 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 9357311-9367310 Capsella rubella
Carub.0006s2450 10.0kb downstream 10.0kb downstream 14421 true scaffold_6: 9367311-9381731 Capsella rubella
Carub.0006s2450 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 9371732-9381731 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360218 5261 Brassicaceae View MSA
123828544 5264 Brassicales-Malvales View MSA
124337472 5266 SBM View MSA
124249574 5268 Malvidae View MSA
124061778 5270 Rosid View MSA
123740183 5271 Pentapetalae View MSA
122787371 5272 Eudicot View MSA
122045647 5273 Angiosperm View MSA
123429084 5275 Viridiplantae View MSA
121345438 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain