Gene : Carub.0006s3021 C. rubella v1.1
Defline:  (1 of 3) PTHR12411//PTHR12411:SF345 - CYSTEINE PROTEASE FAMILY C1-RELATED // SUBFAMILY NOT NAMED Genomic Order:  3021
Name:  ? Carub.0006s3021 Secondary Identifier:  ? PAC:39246912
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3021 0.5kb upstream 0.5kb upstream 2234 true scaffold_6: 13711508-13713741 Capsella rubella
Carub.0006s3021 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 13711508-13712007 Capsella rubella
Carub.0006s3021 0.5kb downstream 0.5kb downstream 2234 true scaffold_6: 13712008-13714241 Capsella rubella
Carub.0006s3021 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 13713742-13714241 Capsella rubella
Carub.0006s3021 1.0kb upstream 1.0kb upstream 2734 true scaffold_6: 13711008-13713741 Capsella rubella
Carub.0006s3021 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 13711008-13712007 Capsella rubella
Carub.0006s3021 1.0kb downstream 1.0kb downstream 2734 true scaffold_6: 13712008-13714741 Capsella rubella
Carub.0006s3021 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 13713742-13714741 Capsella rubella
Carub.0006s3021 2.0kb upstream 2.0kb upstream 3734 true scaffold_6: 13710008-13713741 Capsella rubella
Carub.0006s3021 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 13710008-13712007 Capsella rubella
Carub.0006s3021 2.0kb downstream 2.0kb downstream 3734 true scaffold_6: 13712008-13715741 Capsella rubella
Carub.0006s3021 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 13713742-13715741 Capsella rubella
Carub.0006s3021 5.0kb upstream 5.0kb upstream 6734 true scaffold_6: 13707008-13713741 Capsella rubella
Carub.0006s3021 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 13707008-13712007 Capsella rubella
Carub.0006s3021 5.0kb downstream 5.0kb downstream 6734 true scaffold_6: 13712008-13718741 Capsella rubella
Carub.0006s3021 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 13713742-13718741 Capsella rubella
Carub.0006s3021 10.0kb upstream 10.0kb upstream 11734 true scaffold_6: 13702008-13713741 Capsella rubella
Carub.0006s3021 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 13702008-13712007 Capsella rubella
Carub.0006s3021 10.0kb downstream 10.0kb downstream 11734 true scaffold_6: 13712008-13723741 Capsella rubella
Carub.0006s3021 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 13713742-13723741 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379070 5261 Brassicaceae View MSA
123842115 5264 Brassicales-Malvales View MSA
124323253 5266 SBM View MSA
124169389 5268 Malvidae View MSA
124041298 5270 Rosid View MSA
123751389 5271 Pentapetalae View MSA
122796567 5272 Eudicot View MSA
122043914 5273 Angiosperm View MSA
123428950 5275 Viridiplantae View MSA
121348634 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain