Gene : Carub.0006s1694 C. rubella v1.1
Defline:  (1 of 1) PTHR21319//PTHR21319:SF5 - RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 // SUBFAMILY NOT NAMED Genomic Order:  1694
Name:  ? Carub.0006s1694 Secondary Identifier:  ? PAC:39248508
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1694 0.5kb upstream 0.5kb upstream 3296 true scaffold_6: 6260492-6263787 Capsella rubella
Carub.0006s1694 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6260492-6260991 Capsella rubella
Carub.0006s1694 0.5kb downstream 0.5kb downstream 3296 true scaffold_6: 6260992-6264287 Capsella rubella
Carub.0006s1694 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6263788-6264287 Capsella rubella
Carub.0006s1694 1.0kb upstream 1.0kb upstream 3796 true scaffold_6: 6259992-6263787 Capsella rubella
Carub.0006s1694 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6259992-6260991 Capsella rubella
Carub.0006s1694 1.0kb downstream 1.0kb downstream 3796 true scaffold_6: 6260992-6264787 Capsella rubella
Carub.0006s1694 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6263788-6264787 Capsella rubella
Carub.0006s1694 2.0kb upstream 2.0kb upstream 4796 true scaffold_6: 6258992-6263787 Capsella rubella
Carub.0006s1694 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6258992-6260991 Capsella rubella
Carub.0006s1694 2.0kb downstream 2.0kb downstream 4796 true scaffold_6: 6260992-6265787 Capsella rubella
Carub.0006s1694 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6263788-6265787 Capsella rubella
Carub.0006s1694 5.0kb upstream 5.0kb upstream 7796 true scaffold_6: 6255992-6263787 Capsella rubella
Carub.0006s1694 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6255992-6260991 Capsella rubella
Carub.0006s1694 5.0kb downstream 5.0kb downstream 7796 true scaffold_6: 6260992-6268787 Capsella rubella
Carub.0006s1694 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6263788-6268787 Capsella rubella
Carub.0006s1694 10.0kb upstream 10.0kb upstream 12796 true scaffold_6: 6250992-6263787 Capsella rubella
Carub.0006s1694 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6250992-6260991 Capsella rubella
Carub.0006s1694 10.0kb downstream 10.0kb downstream 12796 true scaffold_6: 6260992-6273787 Capsella rubella
Carub.0006s1694 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6263788-6273787 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366853 5261 Brassicaceae View MSA
123828340 5264 Brassicales-Malvales View MSA
124340435 5266 SBM View MSA
124251521 5268 Malvidae View MSA
124067904 5270 Rosid View MSA
123739632 5271 Pentapetalae View MSA
122785839 5272 Eudicot View MSA
122043981 5273 Angiosperm View MSA
123428990 5275 Viridiplantae View MSA
121310221 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain