Gene : Carub.0007s0466 C. rubella v1.1
Defline:  (1 of 2) PTHR23416//PTHR23416:SF63 - SIALIC ACID SYNTHASE-RELATED // SERINE ACETYLTRANSFERASE 2-RELATED Genomic Order:  466
Name:  ? Carub.0007s0466 Secondary Identifier:  ? PAC:39232613
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella CYSTSYN-PWY Capsella rubella pathologic  
Crubella PWY-6936 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s0466 0.5kb upstream 0.5kb upstream 3050 true scaffold_7: 1748154-1751203 Capsella rubella
Carub.0007s0466 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 1748154-1748653 Capsella rubella
Carub.0007s0466 0.5kb downstream 0.5kb downstream 3050 true scaffold_7: 1748654-1751703 Capsella rubella
Carub.0007s0466 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 1751204-1751703 Capsella rubella
Carub.0007s0466 1.0kb upstream 1.0kb upstream 3550 true scaffold_7: 1747654-1751203 Capsella rubella
Carub.0007s0466 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 1747654-1748653 Capsella rubella
Carub.0007s0466 1.0kb downstream 1.0kb downstream 3550 true scaffold_7: 1748654-1752203 Capsella rubella
Carub.0007s0466 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 1751204-1752203 Capsella rubella
Carub.0007s0466 2.0kb upstream 2.0kb upstream 4550 true scaffold_7: 1746654-1751203 Capsella rubella
Carub.0007s0466 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 1746654-1748653 Capsella rubella
Carub.0007s0466 2.0kb downstream 2.0kb downstream 4550 true scaffold_7: 1748654-1753203 Capsella rubella
Carub.0007s0466 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 1751204-1753203 Capsella rubella
Carub.0007s0466 5.0kb upstream 5.0kb upstream 7550 true scaffold_7: 1743654-1751203 Capsella rubella
Carub.0007s0466 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 1743654-1748653 Capsella rubella
Carub.0007s0466 5.0kb downstream 5.0kb downstream 7550 true scaffold_7: 1748654-1756203 Capsella rubella
Carub.0007s0466 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 1751204-1756203 Capsella rubella
Carub.0007s0466 10.0kb upstream 10.0kb upstream 12550 true scaffold_7: 1738654-1751203 Capsella rubella
Carub.0007s0466 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 1738654-1748653 Capsella rubella
Carub.0007s0466 10.0kb downstream 10.0kb downstream 12550 true scaffold_7: 1748654-1761203 Capsella rubella
Carub.0007s0466 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 1751204-1761203 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377353 5261 Brassicaceae View MSA
123838527 5264 Brassicales-Malvales View MSA
124322470 5266 SBM View MSA
124240190 5268 Malvidae View MSA
124063279 5270 Rosid View MSA
123743402 5271 Pentapetalae View MSA
122788102 5272 Eudicot View MSA
122045908 5273 Angiosperm View MSA
121349787 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain