Gene : Carub.0006s3536 C. rubella v1.1
Defline:  (1 of 1) 2.1.1.225 - tRNA:m(4)X modification enzyme Genomic Order:  3536
Name:  ? Carub.0006s3536 Secondary Identifier:  ? PAC:39249632
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6829 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3536 0.5kb upstream 0.5kb upstream 2662 true scaffold_6: 15877960-15880621 Capsella rubella
Carub.0006s3536 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 15877960-15878459 Capsella rubella
Carub.0006s3536 0.5kb downstream 0.5kb downstream 2662 true scaffold_6: 15878460-15881121 Capsella rubella
Carub.0006s3536 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 15880622-15881121 Capsella rubella
Carub.0006s3536 1.0kb upstream 1.0kb upstream 3162 true scaffold_6: 15877460-15880621 Capsella rubella
Carub.0006s3536 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 15877460-15878459 Capsella rubella
Carub.0006s3536 1.0kb downstream 1.0kb downstream 3162 true scaffold_6: 15878460-15881621 Capsella rubella
Carub.0006s3536 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 15880622-15881621 Capsella rubella
Carub.0006s3536 2.0kb upstream 2.0kb upstream 4162 true scaffold_6: 15876460-15880621 Capsella rubella
Carub.0006s3536 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 15876460-15878459 Capsella rubella
Carub.0006s3536 2.0kb downstream 2.0kb downstream 4162 true scaffold_6: 15878460-15882621 Capsella rubella
Carub.0006s3536 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 15880622-15882621 Capsella rubella
Carub.0006s3536 5.0kb upstream 5.0kb upstream 7162 true scaffold_6: 15873460-15880621 Capsella rubella
Carub.0006s3536 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 15873460-15878459 Capsella rubella
Carub.0006s3536 5.0kb downstream 5.0kb downstream 7162 true scaffold_6: 15878460-15885621 Capsella rubella
Carub.0006s3536 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 15880622-15885621 Capsella rubella
Carub.0006s3536 10.0kb upstream 10.0kb upstream 12162 true scaffold_6: 15868460-15880621 Capsella rubella
Carub.0006s3536 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 15868460-15878459 Capsella rubella
Carub.0006s3536 10.0kb downstream 10.0kb downstream 12162 true scaffold_6: 15878460-15890621 Capsella rubella
Carub.0006s3536 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 15880622-15890621 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366038 5261 Brassicaceae View MSA
123828827 5264 Brassicales-Malvales View MSA
124336653 5266 SBM View MSA
124240790 5268 Malvidae View MSA
124062140 5270 Rosid View MSA
123739890 5271 Pentapetalae View MSA
122785784 5272 Eudicot View MSA
122046541 5273 Angiosperm View MSA
121347915 5274 Embryophyte View MSA
123424709 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain