Gene : Carub.0006s3385 C. rubella v1.1
Defline:  (1 of 2) 1.3.3.3 - Coproporphyrinogen oxidase / Coproporphyrinogenase Genomic Order:  3385
Name:  ? Carub.0006s3385 Secondary Identifier:  ? PAC:39249932
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella CHLOROPHYLL-SYN Capsella rubella pathologic  
Crubella HEME-BIOSYNTHESIS-II Capsella rubella pathologic  
Crubella PWY-5918 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3385 0.5kb upstream 0.5kb upstream 2599 true scaffold_6: 15276243-15278841 Capsella rubella
Carub.0006s3385 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 15278342-15278841 Capsella rubella
Carub.0006s3385 0.5kb downstream 0.5kb downstream 2599 true scaffold_6: 15275743-15278341 Capsella rubella
Carub.0006s3385 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 15275743-15276242 Capsella rubella
Carub.0006s3385 1.0kb upstream 1.0kb upstream 3099 true scaffold_6: 15276243-15279341 Capsella rubella
Carub.0006s3385 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 15278342-15279341 Capsella rubella
Carub.0006s3385 1.0kb downstream 1.0kb downstream 3099 true scaffold_6: 15275243-15278341 Capsella rubella
Carub.0006s3385 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 15275243-15276242 Capsella rubella
Carub.0006s3385 2.0kb upstream 2.0kb upstream 4099 true scaffold_6: 15276243-15280341 Capsella rubella
Carub.0006s3385 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 15278342-15280341 Capsella rubella
Carub.0006s3385 2.0kb downstream 2.0kb downstream 4099 true scaffold_6: 15274243-15278341 Capsella rubella
Carub.0006s3385 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 15274243-15276242 Capsella rubella
Carub.0006s3385 5.0kb upstream 5.0kb upstream 7099 true scaffold_6: 15276243-15283341 Capsella rubella
Carub.0006s3385 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 15278342-15283341 Capsella rubella
Carub.0006s3385 5.0kb downstream 5.0kb downstream 7099 true scaffold_6: 15271243-15278341 Capsella rubella
Carub.0006s3385 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 15271243-15276242 Capsella rubella
Carub.0006s3385 10.0kb upstream 10.0kb upstream 12099 true scaffold_6: 15276243-15288341 Capsella rubella
Carub.0006s3385 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 15278342-15288341 Capsella rubella
Carub.0006s3385 10.0kb downstream 10.0kb downstream 12099 true scaffold_6: 15266243-15278341 Capsella rubella
Carub.0006s3385 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 15266243-15276242 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122337575 5261 Brassicaceae View MSA
123838034 5264 Brassicales-Malvales View MSA
124337231 5266 SBM View MSA
124243280 5268 Malvidae View MSA
124062707 5270 Rosid View MSA
123737615 5271 Pentapetalae View MSA
122790941 5272 Eudicot View MSA
122043250 5273 Angiosperm View MSA
121345223 5274 Embryophyte View MSA
123424727 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain