Gene : Carub.0006s3477 C. rubella v1.1
Defline:  (1 of 1) PTHR10459//PTHR10459:SF59 - DNA LIGASE // SUBFAMILY NOT NAMED Genomic Order:  3477
Name:  ? Carub.0006s3477 Secondary Identifier:  ? PAC:39249469
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3477 0.5kb upstream 0.5kb upstream 4701 true scaffold_6: 15629723-15634423 Capsella rubella
Carub.0006s3477 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 15633924-15634423 Capsella rubella
Carub.0006s3477 0.5kb downstream 0.5kb downstream 4701 true scaffold_6: 15629223-15633923 Capsella rubella
Carub.0006s3477 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 15629223-15629722 Capsella rubella
Carub.0006s3477 1.0kb upstream 1.0kb upstream 5201 true scaffold_6: 15629723-15634923 Capsella rubella
Carub.0006s3477 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 15633924-15634923 Capsella rubella
Carub.0006s3477 1.0kb downstream 1.0kb downstream 5201 true scaffold_6: 15628723-15633923 Capsella rubella
Carub.0006s3477 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 15628723-15629722 Capsella rubella
Carub.0006s3477 2.0kb upstream 2.0kb upstream 6201 true scaffold_6: 15629723-15635923 Capsella rubella
Carub.0006s3477 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 15633924-15635923 Capsella rubella
Carub.0006s3477 2.0kb downstream 2.0kb downstream 6201 true scaffold_6: 15627723-15633923 Capsella rubella
Carub.0006s3477 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 15627723-15629722 Capsella rubella
Carub.0006s3477 5.0kb upstream 5.0kb upstream 9201 true scaffold_6: 15629723-15638923 Capsella rubella
Carub.0006s3477 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 15633924-15638923 Capsella rubella
Carub.0006s3477 5.0kb downstream 5.0kb downstream 9201 true scaffold_6: 15624723-15633923 Capsella rubella
Carub.0006s3477 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 15624723-15629722 Capsella rubella
Carub.0006s3477 10.0kb upstream 10.0kb upstream 14201 true scaffold_6: 15629723-15643923 Capsella rubella
Carub.0006s3477 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 15633924-15643923 Capsella rubella
Carub.0006s3477 10.0kb downstream 10.0kb downstream 14201 true scaffold_6: 15619723-15633923 Capsella rubella
Carub.0006s3477 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 15619723-15629722 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366499 5261 Brassicaceae View MSA
123831690 5264 Brassicales-Malvales View MSA
124344570 5266 SBM View MSA
124243017 5268 Malvidae View MSA
124074369 5270 Rosid View MSA
123750076 5271 Pentapetalae View MSA
122797319 5272 Eudicot View MSA
122051365 5273 Angiosperm View MSA
121345540 5274 Embryophyte View MSA
123380235 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain