Gene : Carub.0006s2171 C. rubella v1.1
Defline:  (1 of 1) PTHR11972//PTHR11972:SF62 - NADPH OXIDASE // FERRIC REDUCTION OXIDASE 4-RELATED Genomic Order:  2171
Name:  ? Carub.0006s2171 Secondary Identifier:  ? PAC:39250004
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5934 Capsella rubella pathologic  
Crubella PWY-6854 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2171 0.5kb upstream 0.5kb upstream 3523 true scaffold_6: 8132581-8136103 Capsella rubella
Carub.0006s2171 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 8135604-8136103 Capsella rubella
Carub.0006s2171 0.5kb downstream 0.5kb downstream 3523 true scaffold_6: 8132081-8135603 Capsella rubella
Carub.0006s2171 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 8132081-8132580 Capsella rubella
Carub.0006s2171 1.0kb upstream 1.0kb upstream 4023 true scaffold_6: 8132581-8136603 Capsella rubella
Carub.0006s2171 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 8135604-8136603 Capsella rubella
Carub.0006s2171 1.0kb downstream 1.0kb downstream 4023 true scaffold_6: 8131581-8135603 Capsella rubella
Carub.0006s2171 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 8131581-8132580 Capsella rubella
Carub.0006s2171 2.0kb upstream 2.0kb upstream 5023 true scaffold_6: 8132581-8137603 Capsella rubella
Carub.0006s2171 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 8135604-8137603 Capsella rubella
Carub.0006s2171 2.0kb downstream 2.0kb downstream 5023 true scaffold_6: 8130581-8135603 Capsella rubella
Carub.0006s2171 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 8130581-8132580 Capsella rubella
Carub.0006s2171 5.0kb upstream 5.0kb upstream 8023 true scaffold_6: 8132581-8140603 Capsella rubella
Carub.0006s2171 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 8135604-8140603 Capsella rubella
Carub.0006s2171 5.0kb downstream 5.0kb downstream 8023 true scaffold_6: 8127581-8135603 Capsella rubella
Carub.0006s2171 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 8127581-8132580 Capsella rubella
Carub.0006s2171 10.0kb upstream 10.0kb upstream 13023 true scaffold_6: 8132581-8145603 Capsella rubella
Carub.0006s2171 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 8135604-8145603 Capsella rubella
Carub.0006s2171 10.0kb downstream 10.0kb downstream 13023 true scaffold_6: 8122581-8135603 Capsella rubella
Carub.0006s2171 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 8122581-8132580 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362985 5261 Brassicaceae View MSA
123827837 5264 Brassicales-Malvales View MSA
124321489 5266 SBM View MSA
124252171 5268 Malvidae View MSA
124071281 5270 Rosid View MSA
123746738 5271 Pentapetalae View MSA
122787767 5272 Eudicot View MSA
122051677 5273 Angiosperm View MSA
121345980 5274 Embryophyte View MSA
123428579 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain