Gene : Carub.0006s2190 C. rubella v1.1
Defline:  (1 of 7) 1.14.13.132 - Squalene monooxygenase / Squalene epoxidase Genomic Order:  2190
Name:  ? Carub.0006s2190 Secondary Identifier:  ? PAC:39249793
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-2541 Capsella rubella pathologic  
Crubella PWY-5670 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2190 0.5kb upstream 0.5kb upstream 3401 true scaffold_6: 8201679-8205079 Capsella rubella
Carub.0006s2190 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 8204580-8205079 Capsella rubella
Carub.0006s2190 0.5kb downstream 0.5kb downstream 3401 true scaffold_6: 8201179-8204579 Capsella rubella
Carub.0006s2190 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 8201179-8201678 Capsella rubella
Carub.0006s2190 1.0kb upstream 1.0kb upstream 3901 true scaffold_6: 8201679-8205579 Capsella rubella
Carub.0006s2190 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 8204580-8205579 Capsella rubella
Carub.0006s2190 1.0kb downstream 1.0kb downstream 3901 true scaffold_6: 8200679-8204579 Capsella rubella
Carub.0006s2190 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 8200679-8201678 Capsella rubella
Carub.0006s2190 2.0kb upstream 2.0kb upstream 4901 true scaffold_6: 8201679-8206579 Capsella rubella
Carub.0006s2190 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 8204580-8206579 Capsella rubella
Carub.0006s2190 2.0kb downstream 2.0kb downstream 4901 true scaffold_6: 8199679-8204579 Capsella rubella
Carub.0006s2190 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 8199679-8201678 Capsella rubella
Carub.0006s2190 5.0kb upstream 5.0kb upstream 7901 true scaffold_6: 8201679-8209579 Capsella rubella
Carub.0006s2190 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 8204580-8209579 Capsella rubella
Carub.0006s2190 5.0kb downstream 5.0kb downstream 7901 true scaffold_6: 8196679-8204579 Capsella rubella
Carub.0006s2190 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 8196679-8201678 Capsella rubella
Carub.0006s2190 10.0kb upstream 10.0kb upstream 12901 true scaffold_6: 8201679-8214579 Capsella rubella
Carub.0006s2190 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 8204580-8214579 Capsella rubella
Carub.0006s2190 10.0kb downstream 10.0kb downstream 12901 true scaffold_6: 8191679-8204579 Capsella rubella
Carub.0006s2190 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 8191679-8201678 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121691835 5273 Angiosperm View MSA
122336946 5261 Brassicaceae Singleton cluster - no MSA
123777634 5264 Brassicales-Malvales Singleton cluster - no MSA
124275996 5266 SBM Singleton cluster - no MSA
124256495 5268 Malvidae View MSA
124052014 5270 Rosid View MSA
123647887 5271 Pentapetalae View MSA
122681831 5272 Eudicot View MSA
120963671 5274 Embryophyte View MSA
123428498 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain